Metadata-Version: 2.4
Name: memograph
Version: 0.3.0
Summary: A graph-based memory system for LLMs with intelligent retrieval using knowledge graphs, hybrid search, and semantic embeddings
Author-email: Indirakumar <itsmeindirakumar@gmail.com>
License: MIT
Project-URL: Homepage, https://github.com/Indhar01/MemoGraph
Project-URL: Documentation, https://github.com/Indhar01/MemoGraph#readme
Project-URL: Repository, https://github.com/Indhar01/MemoGraph
Project-URL: Issues, https://github.com/Indhar01/MemoGraph/issues
Project-URL: Changelog, https://github.com/Indhar01/MemoGraph/blob/main/CHANGELOG.md
Keywords: llm,memory,knowledge-graph,rag,retrieval,ai,machine-learning,graph-database,semantic-search,vector-embeddings,chatgpt,claude,ollama,langchain,llamaindex,markdown,note-taking,personal-knowledge-management,pkm,second-brain
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: Intended Audience :: Information Technology
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Classifier: Programming Language :: Python :: 3 :: Only
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Operating System :: POSIX :: Linux
Classifier: Operating System :: Microsoft :: Windows
Classifier: Operating System :: MacOS
Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
Classifier: Topic :: Software Development :: Libraries :: Python Modules
Classifier: Topic :: Text Processing :: Markup :: Markdown
Classifier: Topic :: Database
Classifier: Topic :: Office/Business
Classifier: Framework :: AsyncIO
Classifier: Typing :: Typed
Requires-Python: >=3.10
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: PyYAML>=6.0
Requires-Dist: requests>=2.31.0
Requires-Dist: mcp>=1.0.0
Provides-Extra: openai
Requires-Dist: openai<2.0.0,>=1.0.0; extra == "openai"
Requires-Dist: tiktoken>=0.5.0; extra == "openai"
Provides-Extra: anthropic
Requires-Dist: anthropic>=0.39.0; extra == "anthropic"
Provides-Extra: ollama
Requires-Dist: ollama>=0.3.0; extra == "ollama"
Provides-Extra: litellm
Requires-Dist: litellm<2.0.0,>=1.52.0; extra == "litellm"
Provides-Extra: embeddings
Requires-Dist: sentence-transformers>=2.2.0; extra == "embeddings"
Requires-Dist: numpy>=1.24.0; extra == "embeddings"
Provides-Extra: web
Requires-Dist: fastapi>=0.104.0; extra == "web"
Requires-Dist: uvicorn[standard]>=0.24.0; extra == "web"
Provides-Extra: integrations
Requires-Dist: watchdog>=3.0.0; extra == "integrations"
Requires-Dist: python-frontmatter>=1.0.0; extra == "integrations"
Provides-Extra: all
Requires-Dist: memograph[anthropic,embeddings,integrations,litellm,ollama,openai]; extra == "all"
Provides-Extra: dev
Requires-Dist: pytest>=7.4.0; extra == "dev"
Requires-Dist: pytest-cov>=4.1.0; extra == "dev"
Requires-Dist: pytest-asyncio>=0.21.0; extra == "dev"
Requires-Dist: pytest-benchmark>=4.0.0; extra == "dev"
Requires-Dist: ruff>=0.7.0; extra == "dev"
Requires-Dist: mypy>=1.7.0; extra == "dev"
Requires-Dist: pre-commit>=3.5.0; extra == "dev"
Requires-Dist: black>=23.11.0; extra == "dev"
Requires-Dist: isort>=5.12.0; extra == "dev"
Requires-Dist: psutil>=5.9.0; extra == "dev"
Requires-Dist: rich>=13.0.0; extra == "dev"
Requires-Dist: types-PyYAML>=6.0; extra == "dev"
Requires-Dist: types-requests>=2.31.0; extra == "dev"
Requires-Dist: watchdog>=3.0.0; extra == "dev"
Requires-Dist: python-frontmatter>=1.0.0; extra == "dev"
Dynamic: license-file

# MemoGraph 🧠

<!-- mcp-name: io.github.Indhar01/memograph -->

[![PyPI version](https://img.shields.io/pypi/v/memograph)](https://pypi.org/project/memograph/)
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[![MCP Registry](https://img.shields.io/badge/MCP_Registry-Published-blue)](https://modelcontextprotocol.io/registry)
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A graph-based memory system for LLMs with intelligent retrieval. MemoGraph provides a powerful solution to the LLM memory problem by combining knowledge graphs, hybrid retrieval, and semantic search.

> **📊 Project Status:** MemoGraph is **production-ready**! See [docs/PROJECT_STATUS.md](docs/PROJECT_STATUS.md) for current status and [docs/FUTURE_ENHANCEMENTS.md](docs/FUTURE_ENHANCEMENTS.md) for optional improvements.

## ✨ Features

- **🤖 Smart Auto-Organization Engine**: Automatically extract structured information from memories using LLMs
  - Topics, subtopics, and recurring themes
  - People with roles and organizations
  - Action items with assignees and deadlines
  - Decisions, questions, and sentiment analysis
  - Risks, ideas, and timeline events
- **🏷️ AI-Powered Tag Suggestions**: Automatically suggest relevant tags using semantic analysis and content structure detection
- **🔗 AI-Powered Link Suggestions**: Intelligently recommend wikilinks to related notes using semantic similarity and graph analysis
- **Graph-Based Memory**: Navigate knowledge using bidirectional wikilinks and backlinks
- **Hybrid Retrieval**: Combines keyword matching, graph traversal, and optional vector embeddings
- **Markdown-Native**: Human-readable markdown files with YAML frontmatter
- **Memory Types**: Support for episodic, semantic, procedural, and fact-based memories
- **Smart Indexing**: Efficient caching system that only re-indexes changed files
- **CLI & Python API**: Use via command line or integrate into your Python applications
- **Multiple LLM Providers**: Works with Ollama, Claude, and OpenAI
- **Context Compression**: Intelligent token budgeting for optimal context windows
- **Salience Scoring**: Memory importance ranking for better retrieval

## 🚀 Quick Start

### Installation

```bash
pip install memograph
```

Install with optional dependencies:

```bash
# For OpenAI support
pip install memograph[openai]

# For Anthropic Claude support
pip install memograph[anthropic]

# For Ollama support
pip install memograph[ollama]

# For embedding support
pip install memograph[embeddings]

# Install everything
pip install memograph[all]
```

### Python Usage

```python
from memograph import MemoryKernel, MemoryType

# Initialize the kernel attached to your vault path
kernel = MemoryKernel("~/my-vault")

# Ingest all notes in the vault
stats = kernel.ingest()
print(f"Indexed {stats['indexed']} memories.")

# Programmatically add a new memory
kernel.remember(
    title="Meeting Note",
    content="Decided to use BFS graph traversal for retrieval.",
    memory_type=MemoryType.EPISODIC,
    tags=["design", "retrieval"]
)

# Retrieve context for an LLM query
context = kernel.context_window(
    query="how does retrieval work?",
    tags=["retrieval"],
    depth=2,
    top_k=8
)

print(context)
```

## 🔌 MCP Server (Model Context Protocol)

MemoGraph includes a full-featured MCP server for seamless integration with AI assistants like **Cline** and **Claude Desktop**.

**📖 New to MemoGraph MCP?** See the **[MCP User Guide](docs/MCP_USER_GUIDE.md)** for practical usage instructions and examples!

**🚨 Having connection issues?** See **[Setup & Troubleshooting Guide](docs/MCP_SETUP_TROUBLESHOOTING.md)** - Common fixes for "cannot connect" errors!

### 19 Available Tools

| Category | Tools | Description |
|----------|-------|-------------|
| **Search** | `search_vault`, `query_with_context` | Semantic search and context retrieval |
| **Create** | `create_memory`, `import_document` | Add memories and import documents |
| **Read** | `list_memories`, `get_memory`, `get_vault_info` | Browse and retrieve memories |
| **Update** | `update_memory` | Modify existing memories |
| **Delete** | `delete_memory` | Remove memories by ID |
| **Analytics** | `get_vault_stats` | Vault statistics and insights |
| **Discovery** | `list_available_tools` | List all available tools |
| **Autonomous** | `auto_hook_query`, `auto_hook_response`, `configure_autonomous_mode`, `get_autonomous_config` | Autonomous memory management |
| **Graph** | `relate_memories`, `search_by_graph`, `find_path` | Graph-native linking and traversal |
| **Bulk** | `bulk_create` | Create multiple memories in one call |

### Quick Setup for Cline

Add to your `~/.cline/mcp_settings.json`:

```json
{
  "mcp": {
    "servers": {
      "memograph": {
        "command": "python",
        "args": ["-m", "memograph.mcp.run_server"],
        "env": {
          "MEMOGRAPH_VAULT": "/path/to/your/vault"
        }
      }
    }
  }
}
```

### Quick Setup for Claude Desktop

Add to your `claude_desktop_config.json`:

```json
{
  "mcpServers": {
    "memograph": {
      "command": "python",
      "args": ["-m", "memograph.mcp.run_server", "--vault", "/path/to/your/vault"]
    }
  }
}
```

### Install from MCP Registry

**NEW**: MemoGraph is now available in the official MCP Registry! 🎉

**Registry URL**: [https://github.com/modelcontextprotocol/servers/tree/main/src/memograph](https://github.com/modelcontextprotocol/servers)

#### Step 1: Install MemoGraph

First, install the Python package:

```bash
pip install memograph
```

#### Step 2: Configure in Your MCP Client

The MCP Registry provides the configuration template. Add to your client's config file:

**For Cline** (`~/.cline/mcp_settings.json`):
```json
{
  "mcp": {
    "servers": {
      "memograph": {
        "command": "python",
        "args": ["-m", "memograph.mcp.run_server"],
        "env": {
          "MEMOGRAPH_VAULT": "/path/to/your/vault"
        }
      }
    }
  }
}
```

**For Claude Desktop** (`claude_desktop_config.json`):
```json
{
  "mcpServers": {
    "memograph": {
      "command": "python",
      "args": ["-m", "memograph.mcp.run_server"],
      "env": {
        "MEMOGRAPH_VAULT": "/path/to/your/vault"
      }
    }
  }
}
```

**Benefits of MCP Registry Listing:**
- ✅ Official registry backed by Anthropic, GitHub, and Microsoft
- ✅ Discoverable by all MCP-compatible clients
- ✅ Verified server card and metadata
- ✅ Direct link from PyPI package
- ✅ Trusted by the MCP community

**Note**: The registry uses the PyPI package version. When you `pip install memograph`, you automatically get the latest registry-listed version.

See **[MCP_REGISTRY_GUIDE.md](docs/MCP_REGISTRY_GUIDE.md)** for complete submission and configuration guide.

### Usage Examples

Once configured, use natural language with your AI assistant:

```
"Search my vault for memories about Python"
"Create a memory titled 'Project Ideas' with content '...'"
"Update memory abc-123 to have salience 0.9"
"Delete memory xyz-456"
"What tools are available?"
"Get vault statistics"
```

See **[CONFIG_REFERENCE.md](memograph/mcp/CONFIG_REFERENCE.md)** for complete MCP configuration guide.

### Using Auto-Save Hooks

MemoGraph provides autonomous hooks to save conversations automatically:

- ⚠️ **Important**: Hooks are passive tools - see [Autonomous Hooks Guide](docs/AUTONOMOUS_HOOKS_GUIDE.md) for setup
- 📝 Quick fix: Add custom instructions to Claude Desktop (instructions in guide)
- 🔧 Configure with `MEMOGRAPH_AUTONOMOUS_MODE=true`

[Read the full Autonomous Hooks User Guide →](docs/AUTONOMOUS_HOOKS_GUIDE.md)

## 🎯 CLI Usage

MemoGraph comes with a powerful CLI for managing your vault and chatting with it.

### Ingest

Index your markdown files into the graph database:

```bash
memograph --vault ~/my-vault ingest
```

Force re-indexing all files:

```bash
memograph --vault ~/my-vault ingest --force
```

### Remember

Quickly add a memory from the command line:

```bash
memograph --vault ~/my-vault remember \
    --title "Team Sync" \
    --content "Discussed Q3 goals." \
    --tags planning q3
```

### Context Window

Generate context for a query:

```bash
memograph --vault ~/my-vault context \
    --query "What did we decide about the database?" \
    --tags architecture \
    --depth 2 \
    --top-k 5
```

### Ask (Interactive Chat)

Start an interactive chat session with your vault context:

```bash
memograph --vault ~/my-vault ask --chat --provider ollama --model llama3
```

Or ask a single question:

```bash
memograph --vault ~/my-vault ask \
    --query "Summarize our design decisions" \
    --provider claude \
    --model claude-3-5-sonnet-20240620
```

### Diagnostics

Check your environment and connection to LLM providers:

```bash
memograph --vault ~/my-vault doctor

### Import Documents

Import documents (TXT, PDF, DOCX) and convert them to markdown:

```bash
# Import a single file
memograph --vault ~/my-vault import document.pdf --type episodic

# Import entire folder
memograph --vault ~/my-vault import ~/Documents --recursive

# Preview files without importing (dry run)
memograph --vault ~/my-vault import ~/Documents --dry-run

# Auto-ingest after import
memograph --vault ~/my-vault import document.pdf --auto-ingest
```

### Batch Operations

Efficiently manage multiple memories at once:

```bash
# Bulk create memories from JSON/CSV
memograph --vault ~/my-vault batch-create memories.json

# Bulk update memories by filter
memograph --vault ~/my-vault batch-update \
    --filter-tags outdated \
    --add-tags reviewed \
    --salience 0.8

# Bulk delete with safety checks
memograph --vault ~/my-vault batch-delete \
    --filter-type episodic \
    --filter-max-salience 0.3 \
    --dry-run
```

### Data Management

Export, backup, and restore your vault:

```bash
# Export vault to JSON/CSV/Markdown
memograph --vault ~/my-vault export --format json --output backup.json

# Create timestamped backup
memograph --vault ~/my-vault backup --output ./backups

# Restore from backup
memograph --vault ~/my-vault import-backup backup.zip
```

### Configuration & Statistics

Manage settings and view vault analytics:

```bash
# View vault statistics
memograph --vault ~/my-vault stats

# Configure settings
memograph config set embedding_provider openai
memograph config get embedding_provider
memograph config list

# Manage profiles
memograph config profile create work --vault ~/work-vault
memograph config profile use work
```

### MCP Setup

Interactive wizard to configure MCP server for Claude Desktop or Cline:

```bash
# Run interactive setup wizard
memograph setup-mcp

# Verify MCP configuration
memograph verify-mcp
```

**📖 Complete CLI Documentation:** See **[CLI Usage Guide](MEMOGRAPH_CLI_USAGE_GUIDE.md)** for detailed documentation with 200+ examples covering all 24 commands.

### 🤖 AI Features

MemoGraph includes powerful AI-powered features to enhance your knowledge management workflow. See **[AI Features Guide](docs/guides/AI_FEATURES.md)** for complete documentation.

#### 🏷️ AutoTagger - Intelligent Tag Suggestions

Automatically suggest relevant tags using semantic analysis, content structure, and existing patterns:

```bash
# Suggest tags for a note
memograph suggest-tags note.md

# Apply high-confidence suggestions automatically
memograph suggest-tags note.md --apply

# Adjust confidence threshold and limit
memograph suggest-tags note.md --min-confidence 0.5 --max-suggestions 10
```

**Features:** Frequency-based extraction • Semantic similarity • Structure detection • Pattern learning • Confidence scoring

#### 🔗 LinkSuggester - Smart Wikilink Recommendations

Intelligently recommend wikilinks to related notes using semantic similarity and graph analysis:

```bash
# Suggest links for a note
memograph suggest-links note.md

# Apply suggestions automatically
memograph suggest-links note.md --apply

# Show bidirectional link opportunities
memograph suggest-links note.md --show-bidirectional
```

**Features:** Semantic search • Keyword matching • Graph-based suggestions • Bidirectional detection • Target previews

#### 🔍 GapDetector - Knowledge Base Analysis

Identify missing topics, weak coverage, and isolated notes in your vault:

```bash
# Detect all gaps
memograph detect-gaps

# Focus on high-severity gaps
memograph detect-gaps --min-severity 0.7

# Export results to JSON
memograph detect-gaps --output json > gaps.json
```

**Gap Types:** Missing Topics • Weak Coverage • Isolated Notes • Missing Links

#### 📊 Knowledge Analysis - Comprehensive Insights

Get comprehensive analysis of your entire knowledge base:

```bash
# Full analysis with all features
memograph analyze-knowledge

# Export detailed report to JSON
memograph analyze-knowledge --output json > analysis.json
```

**Analysis Includes:** Vault statistics • Topic clustering • Learning paths • Gap detection • Connection analysis

#### Python API for AI Features

```python
from memograph import MemoryKernel
from memograph.ai import AutoTagger, LinkSuggester, GapDetector

kernel = MemoryKernel("~/my-vault")
kernel.ingest()

# Get tag suggestions
tagger = AutoTagger(kernel, min_confidence=0.4)
suggestions = await tagger.suggest_tags(
    content="Python is great for data science",
    title="Data Science with Python"
)

# Get link suggestions
suggester = LinkSuggester(kernel, min_confidence=0.5)
links = await suggester.suggest_links(
    content="Python async programming tutorial",
    title="Async Python"
)

# Detect knowledge gaps
detector = GapDetector(kernel, min_severity=0.5)
gaps = await detector.detect_gaps()

# Comprehensive analysis
analysis = await detector.analyze_knowledge_base()
```

**📖 Complete Documentation:**
- **[AI Features Guide](docs/guides/AI_FEATURES.md)** - Comprehensive guide with examples
- **[Web UI Guide](docs/guides/WEB_UI_GUIDE.md)** - Using AI features in the browser
- **[MCP AI Tools Guide](docs/guides/MCP_AI_TOOLS.md)** - AI features for Claude & Cline

**💡 Use Cases:** Auto-organize notes • Discover connections • Identify gaps • Maintain consistency • Build learning paths

## 📖 Core Concepts

### Memory Types

MemoGraph supports different types of memories inspired by cognitive science:

- **Episodic**: Personal experiences and events (e.g., meeting notes)
- **Semantic**: Facts and general knowledge (e.g., documentation)
- **Procedural**: How-to knowledge and processes (e.g., tutorials)
- **Fact**: Discrete factual information (e.g., configuration values)

### Graph Traversal

The library uses BFS (Breadth-First Search) to traverse your knowledge graph:

```python
# Retrieve nodes with depth=2 (2 hops from seed nodes)
nodes = kernel.retrieve_nodes(
    query="graph algorithms",
    depth=2,  # Traverse up to 2 levels deep
    top_k=10  # Return top 10 relevant memories
)
```

### Salience Scoring

Each memory has a salience score (0.0-1.0) that represents its importance:

```yaml
---
title: "Critical Architecture Decision"
salience: 0.9
memory_type: semantic
---

We decided to use PostgreSQL for better ACID guarantees...
```

## 🏗️ Project Structure

```
MemoGraph/
├── memograph/          # Main package
│   ├── core/           # Core functionality
│   │   ├── kernel.py   # Memory kernel
│   │   ├── graph.py    # Graph implementation
│   │   ├── retriever.py # Hybrid retrieval
│   │   ├── indexer.py  # File indexing
│   │   └── parser.py   # Markdown parsing
│   ├── adapters/       # LLM and embedding adapters
│   │   ├── embeddings/ # Embedding providers
│   │   ├── frameworks/ # Framework integrations
│   │   └── llm/        # LLM providers
│   ├── storage/        # Storage and caching
│   ├── mcp/            # MCP server implementation
│   └── cli.py          # CLI implementation
├── tests/              # Test suite
├── examples/           # Example usage
└── scripts/            # Utility scripts
```

## 🤝 Contributing

We welcome contributions! Please see our [Contributing Guide](CONTRIBUTING.md) for details.

### Development Setup

1. Clone the repository:
   ```bash
   git clone https://github.com/Indhar01/MemoGraph.git
   cd MemoGraph
   ```

2. Install in development mode:
   ```bash
   pip install -e ".[all,dev]"
   ```

3. Install pre-commit hooks:
   ```bash
   pre-commit install
   ```

4. Run tests:
   ```bash
   pytest
   ```

### Code Quality

We maintain high code quality standards:

- **Linting**: Ruff for fast Python linting
- **Formatting**: Ruff formatter for consistent code style
- **Type Checking**: MyPy for static type analysis
- **Testing**: Pytest with comprehensive test coverage
- **Pre-commit Hooks**: Automated checks before each commit

## 📚 Documentation

### Getting Started
- **[MCP User Guide](docs/MCP_USER_GUIDE.md)** - ⭐ **Start here!** Complete guide for using MemoGraph MCP
- **[Setup & Troubleshooting](docs/MCP_SETUP_TROUBLESHOOTING.md)** - 🚨 **Can't connect?** Step-by-step fixes for connection issues
- **[MCP Testing Guide](docs/MCP_TESTING_GUIDE.md)** - Testing your MCP server after setup

### For Developers & Contributors
- **[MCP Registry Guide](docs/MCP_REGISTRY_GUIDE.md)** - Publishing to official MCP Registry
- **[Versioning Strategy](docs/VERSIONING.md)** - Semantic versioning and release planning
- **[AGENTS.md](AGENTS.md)** - Guide for AI agents working with this codebase
- **[Contributing Guide](CONTRIBUTING.md)** - How to contribute to the project
- **[Code of Conduct](CODE_OF_CONDUCT.md)** - Community guidelines
- **[Security Policy](SECURITY.md)** - Security reporting and best practices
- **[Changelog](CHANGELOG.md)** - Version history and changes

## 🔒 Security

See our [Security Policy](SECURITY.md) for reporting vulnerabilities.

## 📄 License

This project is licensed under the MIT License - see the [LICENSE](LICENSE) file for details.

## 🌟 Acknowledgments

Inspired by the need for better memory management in LLM applications. Built with:

- Graph-based knowledge representation
- Hybrid retrieval strategies
- Cognitive science principles

## 📬 Contact & Support

- **Issues**: [GitHub Issues](https://github.com/Indhar01/MemoGraph/issues)
- **Discussions**: [GitHub Discussions](https://github.com/Indhar01/MemoGraph/discussions)

## 📣 Community & Feedback

We value community feedback and contributions! Here's how to get involved:

### Report Issues
Found a bug or have a feature request? [Open an issue](https://github.com/Indhar01/MemoGraph/issues/new) on GitHub.

### Discussions
Join the conversation in [GitHub Discussions](https://github.com/Indhar01/MemoGraph/discussions):
- Ask questions
- Share use cases
- Suggest improvements
- Show what you've built

### Contributing
We welcome contributions! See our [Contributing Guide](CONTRIBUTING.md) for details on:
- Code contributions
- Documentation improvements
- Bug reports and feature requests
- Community support

### Stay Updated
- ⭐ Star the repository on [GitHub](https://github.com/Indhar01/MemoGraph)
- 👁️ Watch for updates and releases
- 📦 Follow the project on [PyPI](https://pypi.org/project/memograph/)
- 🔗 Check out the [MCP Registry listing](https://github.com/modelcontextprotocol/servers/tree/main/src/memograph)

## 🚦 Status

**Current Version**: 0.1.1 (Alpha - Marketplace Ready)

This project is in active development with a focus on code quality and stability:

- ✅ Core functionality is stable and tested
- ✅ All linter checks passing (Ruff)
- ✅ Type checking configured (MyPy)
- ✅ Pre-commit hooks enabled
- ✅ Comprehensive test suite
- ⚠️ API may change in minor versions until v1.0.0

**Recent Improvements**:
- 🎉 **Published to official MCP Registry** ([io.github.indhar01/memograph](https://github.com/modelcontextprotocol/servers/tree/main/src/memograph))
- 📦 **Version 0.1.1 Released** with registry integration improvements
- Enhanced code quality with Ruff linting and formatting
- Added comprehensive type checking with MyPy
- Improved project structure and organization
- Updated MCP server with 19 tools including autonomous features and graph operations
- Added AGENTS.md for AI assistant integration
- Created comprehensive MCP Registry submission guide
- Improved documentation with accurate installation instructions

---

Made with ❤️ for better LLM memory management
