AUTHORS.md
CHANGELOG.md
CODE_OF_CONDUCT.md
LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.cfg
setup.py
mdaencore/__init__.py
mdaencore/bootstrap.py
mdaencore/confdistmatrix.py
mdaencore/covariance.py
mdaencore/cutils.c
mdaencore/cutils.pyx
mdaencore/similarity.py
mdaencore/utils.py
mdaencore.egg-info/PKG-INFO
mdaencore.egg-info/SOURCES.txt
mdaencore.egg-info/dependency_links.txt
mdaencore.egg-info/requires.txt
mdaencore.egg-info/top_level.txt
mdaencore/clustering/ClusterCollection.py
mdaencore/clustering/ClusteringMethod.py
mdaencore/clustering/__init__.py
mdaencore/clustering/affinityprop.c
mdaencore/clustering/affinityprop.pyx
mdaencore/clustering/cluster.py
mdaencore/clustering/include/ap.h
mdaencore/clustering/src/ap.c
mdaencore/dimensionality_reduction/DimensionalityReductionMethod.py
mdaencore/dimensionality_reduction/__init__.py
mdaencore/dimensionality_reduction/reduce_dimensionality.py
mdaencore/dimensionality_reduction/stochasticproxembed.c
mdaencore/dimensionality_reduction/stochasticproxembed.pyx
mdaencore/dimensionality_reduction/include/spe.h
mdaencore/dimensionality_reduction/src/spe.c
mdaencore/tests/__init__.py
mdaencore/tests/test_mdaencore.py