Index

C | F | H | I | L | M | O | R | S

C

c_codon_mut_dist() (in module cobilib)
calculate_RF() (in module cobilib)
calculate_RF_dic() (in module cobilib)
calculate_RSCU() (in module cobilib)
calculate_RSCU_dic() (in module cobilib)
change_amino_acid_code() (in module cobilib)
cobigui (module)
cobilib (module)
codon_mut_dist() (in module cobilib)
compute_steady_state() (in module cobilib)

F

Fitnessfunction (class in cobilib)

H

hessian_em() (in module cobilib)
highly_expressed_genes_by_file() (in module cobilib)
highly_expressed_genes_by_id() (in module cobilib)

I

init_fitnessfunctions() (in module cobilib)
init_fitnessmatrix_for_amino_acids() (in module cobilib)
is_ambig_codon() (in module cobilib)
isomap() (in module cobilib)

L

lle() (in module cobilib)
load_fasta() (in module cobilib)
load_fasta_from_url() (in module cobilib)
load_genbank() (in module cobilib)
load_plaintext() (in module cobilib)

M

make_codon_histogram() (in module cobilib)
make_codon_histogram_dic() (in module cobilib)
make_codon_histogram_dic_combined() (in module cobilib)
make_evolmatrix() (in module cobilib)
make_jc69_mutationmatrix() (in module cobilib)

O

optimize_dic() (in module cobilib)
optimize_sequence() (in module cobilib)

R

relative_hellinger_distance() (in module cobilib)
relative_jeffrey_divergence() (in module cobilib)
relative_minkowski_distance() (in module cobilib)
remove_stopcodons_and_one_codon_amino_acids() (in module cobilib)
run_model() (in module cobilib)

S

setup_parser() (in module cobilib)
spectral() (in module cobilib)