.gitignore
LICENSE
README.md
README_PyPi.md
default.config
pyproject.toml
requirements.txt
setup_improve.sh
examples/README.md
examples/download_example_model.sh
examples/end_to_end_example.sh
examples/infer_examples.py
examples/lgbm_example_runtime_config.ini
examples/lgbm_model_parameters.py
examples/model_parameters.yaml
examples/preprocessing_examples.py
examples/set_custom_cli_options.py
examples/train_examples.py
examples/drug_response_prediction/.gitkeep
improvelib/README.md
improvelib/__init__.py
improvelib/data_loader.py
improvelib/metrics.py
improvelib/split_generation.py
improvelib/utils.py
improvelib.egg-info/PKG-INFO
improvelib.egg-info/SOURCES.txt
improvelib.egg-info/dependency_links.txt
improvelib.egg-info/requires.txt
improvelib.egg-info/top_level.txt
improvelib/Benchmarks/Base.py
improvelib/Benchmarks/Docking.py
improvelib/Benchmarks/drug_response_prediction.py
improvelib/Tests/Data/common_parameters.yml
improvelib/Tests/Data/default.cfg
improvelib/applications/__init__.py
improvelib/applications/drug_response_prediction/__init__.py
improvelib/applications/drug_response_prediction/common_parameters.yml
improvelib/applications/drug_response_prediction/config.py
improvelib/applications/drug_response_prediction/drp_utils.py
improvelib/applications/drug_response_prediction/drug_utils.py
improvelib/applications/drug_response_prediction/omics_utils.py
improvelib/initializer/__init__.py
improvelib/initializer/cli.py
improvelib/initializer/cli_params_def.py
improvelib/initializer/config.py
improvelib/initializer/stage_config.py
improvelib/workflow_utils/__init__.py
improvelib/workflow_utils/cross_study/README.md
improvelib/workflow_utils/cross_study/__init__.py
improvelib/workflow_utils/cross_study/csa_utils.py
improvelib/workflow_utils/learning_curve/__init__.py
python/improve_utils.py
python/utils.py
scripts/get-benchmarks
templates/._infer_template.py
templates/._preprocess_template.py
templates/common_params.yml
templates/infer_template.py
templates/model_parameters.py
templates/preprocess_template.py
templates/train_template.py
tests/README.md
tests/__init__.py
tests/default.cfg
tests/model_infer_improve.py
tests/model_preprocess_improve.py
tests/model_train_improve.py
tests/optional.cfg
tests/test_drp_params.py
workflows/deephyper_hpo/.gitkeep
workflows/parsl_csa/.gitkeep