.gitignore
CHANGELOG.md
CODE_OF_CONDUCT.md
KICKOFF_DISCUSSION.md
LICENSE
MANIFEST.in
README.md
pyproject.toml
.github/workflows/pypi_release.yaml
.github/workflows/tests.yaml
docs/.gitignore
docs/CNAME
docs/README.md
docs/_quarto.yml
docs/_variables.yml
docs/conduct.md
docs/index.md
docs/migration.qmd
docs/overview.md
docs/preview
docs/publish
docs/quarto_utils.py
docs/render
docs/requirements.txt
docs/tutorials.md
docs/whats-new.md
docs/assets/favicon.ico
docs/assets/starsim-logo-dark.png
docs/assets/starsim-logo.png
docs/assets/styles-dark.scss
docs/assets/styles-light.scss
docs/assets/styles.css
docs/tutorials/nigeria_cancer_cases.csv
docs/tutorials/nigeria_cancer_types.csv
docs/tutorials/south_africa_age_pyramid.csv
docs/tutorials/tut_analyzers.qmd
docs/tutorials/tut_calibration.qmd
docs/tutorials/tut_interventions.qmd
docs/tutorials/tut_intro.qmd
docs/tutorials/tut_people.qmd
docs/tutorials/tut_plotting.qmd
docs/tutorials/tut_running.qmd
examples/m07_uq_sweep.py
examples/t05_screen_algorithms.py
hpvsim/__init__.py
hpvsim/analyzers.py
hpvsim/calibration.py
hpvsim/cross_genotype.py
hpvsim/defaults.py
hpvsim/demographics.py
hpvsim/hiv.py
hpvsim/hpv.py
hpvsim/interventions.py
hpvsim/migration_utils.py
hpvsim/misc.py
hpvsim/network.py
hpvsim/parameters.py
hpvsim/plotting.py
hpvsim/products.py
hpvsim/seeding.py
hpvsim/settings.py
hpvsim/sim.py
hpvsim/utils.py
hpvsim/version.py
hpvsim.egg-info/PKG-INFO
hpvsim.egg-info/SOURCES.txt
hpvsim.egg-info/dependency_links.txt
hpvsim.egg-info/entry_points.txt
hpvsim.egg-info/requires.txt
hpvsim.egg-info/top_level.txt
hpvsim/data/__init__.py
hpvsim/data/country.py
hpvsim/data/downloaders.py
hpvsim/data/hiv.py
hpvsim/data/loaders.py
hpvsim/data/products_dx.csv
hpvsim/data/products_tx.csv
hpvsim/data/products_txvx.csv
hpvsim/data/products_vx.csv
hpvsim/data/test_downloaders.py
hpvsim/data/test_loaders.py
hpvsim/data/hiv/rwanda/art_coverage_by_age_females.csv
hpvsim/data/hiv/rwanda/art_coverage_by_age_males.csv
hpvsim/data/hiv/rwanda/hiv_incidence.csv
hpvsim/data/hiv/rwanda/hiv_prevalence.csv
hpvsim/regression/pars_v0.2.6.json
hpvsim/regression/pars_v0.2.9.json
hpvsim/regression/pars_v0.3.0.json
hpvsim/regression/pars_v0.3.1.json
tests/.coveragerc
tests/README.md
tests/baseline.json
tests/benchmark.json
tests/benchmark_profile.py
tests/check_coverage
tests/conftest.py
tests/hpvsim_v1.2.2.yml
tests/pytest.ini
tests/requirements.txt
tests/run_tests
tests/simple.py
tests/test_age_results.py
tests/test_analyzers.py
tests/test_calibration.py
tests/test_cross_immunity.py
tests/test_cross_immunity_combine.py
tests/test_data.py
tests/test_demographics.py
tests/test_genotype_par_overrides.py
tests/test_hiv_art_coverage.py
tests/test_hiv_coinfection_direction.py
tests/test_hiv_connector.py
tests/test_hiv_data_load.py
tests/test_hiv_disease.py
tests/test_hiv_incidence_import.py
tests/test_hiv_rel_imm.py
tests/test_hiv_rel_sev.py
tests/test_hiv_results.py
tests/test_hiv_sim_assembly.py
tests/test_hiv_vx_rel_imm.py
tests/test_hpv.py
tests/test_hpv_state_deltas.py
tests/test_interventions_cascade.py
tests/test_interventions_dynamic_pars_unit.py
tests/test_interventions_eligibility_unit.py
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tests/test_interventions_treat_delay_unit.py
tests/test_interventions_treatment.py
tests/test_interventions_txvx.py
tests/test_interventions_vx_integration.py
tests/test_interventions_vx_no_cross_bleed.py
tests/test_interventions_vx_unit.py
tests/test_multi_genotype.py
tests/test_multigenotype_cancer_dedup.py
tests/test_multiscale_grow_acceptance.py
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tests/test_network.py
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tests/test_plotting.py
tests/test_products_dx_unit.py
tests/test_products_loaders_unit.py
tests/test_products_radiation_unit.py
tests/test_products_tx_unit.py
tests/test_products_txvx_unit.py
tests/test_progression_math.py
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tests/test_uq_sweep_smoke.py
tests/test_utils_module_helpers.py
tests/update_baseline
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tests/regression/anchor_hiv_hpv.py
tests/regression/calibrate_rwanda.py
tests/regression/calibrate_rwanda_genotype.py
tests/regression/calibrate_rwanda_hiv_grow.py
tests/regression/diag_dur_cin_tail.py
tests/regression/diag_hiv_incidence_noise.py
tests/regression/diag_network_oldage.py
tests/regression/diag_rwanda_calib_check.py
tests/regression/diag_rwanda_hivpos_a55.py
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tests/regression/plot_rwanda_calibrated.py
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tests/regression/sim_hiv_rwanda.py
tests/regression/validate_rwanda_genotypes.py
tests/regression/data/rwanda_cancer_incidence_by_age_no_hiv.csv
tests/regression/data/rwanda_cancer_incidence_by_age_with_hiv.csv
tests/regression/data/rwanda_cancer_incidence_no_hiv.csv
tests/regression/data/rwanda_cancer_incidence_with_hiv.csv
tests/test_data/RSA_data.csv
tests/test_data/art_coverage_south_africa.csv
tests/test_data/australia_age_pyramid.csv
tests/test_data/hiv_incidence_south_africa.csv
tests/test_data/india_cancer_cases.csv
tests/test_data/india_cancer_deaths.csv
tests/test_data/india_cancer_types.csv
tests/test_data/india_cin_types.csv
tests/test_data/india_data.csv
tests/test_data/india_hpv_data.csv
tests/test_data/india_hpv_prevalence.csv
tests/test_data/kenya_age_pyramid.csv
tests/test_data/kenya_cancer_incidence.csv
tests/test_data/kenya_cancer_mortality.csv
tests/test_data/kenya_data.csv
tests/test_data/param_space.csv
tests/test_data/param_space_filled.csv
tests/test_data/south_africa_age_pyramid.csv
tests/test_data/south_africa_art_coverage_by_age_females.csv
tests/test_data/south_africa_art_coverage_by_age_males.csv
tests/test_data/south_africa_cancer_data_2020.csv
tests/test_data/south_africa_cancer_data_hiv_2020.csv
tests/test_data/south_africa_cancer_incidence_by_age_no_hiv.csv
tests/test_data/south_africa_cancer_incidence_by_age_with_hiv.csv
tests/test_data/south_africa_female_hiv_mortality.csv
tests/test_data/south_africa_hpv_data.csv
tests/test_data/south_africa_male_hiv_mortality.csv
tests/test_data/south_africa_target_data.csv
tests/test_data/south_africa_type_distribution_cancer.csv
tests/test_data/south_africa_type_distribution_high_grade_lesion.csv
tests/test_data/tanzania_age_pyramid.csv
tests/test_data/tanzania_data.csv
tests/test_data/test_tx_assigner.csv
tests/test_data/test_via.csv
tests/test_data/test_via_triage.csv