A base PDB structure format-aware parser. Subclasses must implement
the internal abstract method _parse_header
in order to
complete the implementation.
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__init__(self,
structure_file,
check_ss=False)
x.__init__(...) initializes x; see help(type(x)) for signature |
source code
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csb.core.EnumItem
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list
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Structure
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parse_biomolecule(self,
number=1,
single=False)
Parse and return the Structure of the biological unit (quaternary
structure) as annotated by the REMARK 350 BIOMOLECULE record. |
source code
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Ensemble
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str
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parse_residue(self,
residue_name,
as_type=None)
Try to parse a PDB residue_name and return its closest
'normal' string representation. |
source code
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str
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parse_residue_safe(self,
residue_name,
as_type)
Same as parse_residue , but returns UNK/Any instead of
raising UnknownPDBResidueError. |
source code
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Structure
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Inherited from object :
__delattr__ ,
__format__ ,
__getattribute__ ,
__hash__ ,
__new__ ,
__reduce__ ,
__reduce_ex__ ,
__repr__ ,
__setattr__ ,
__sizeof__ ,
__str__ ,
__subclasshook__
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