{% extends "omero_biofilefinder/index.html" %} {% block content %}

Open {{ target.dtype | capfirst }}:{{ target.id }} with Biofile Finder...

{{ target.dtype | capfirst }} name: {{ target.name }}
Image count: {{ img_count }}

BioFile Finder loads a table of Images from OMERO with columns created dynamically from Key-Value pairs, creation times and Dataset or Well names. The `File Path` and `Thumbnail` columns required by BioFile Finder are also added.

Open {{ target.dtype | capfirst }} in Biofile Finder

{% if img_count > 400 or bff_parquet_anns %}

Alternative option: Use a script to export Key-Value pairs

Exporting Key-Value pairs for {{ img_count }} Images may time out using the link above. Instead, you can export Key-Value pairs to a dedicated Parquet file (which will be attached to the {{ target.dtype | capfirst }}) using an OMERO.script on the server.

{% if script_id > 0 %}
{% csrf_token %}
{% else %}

The "Export to Biofile Finder" script is not currently installed on this server. Please contact your OMERO administrator.

{% endif %} {% if bff_parquet_anns %}

Existing parquet files:

{% else %}

No parquet files currently attached to {{ target.dtype | capfirst }}:{{ target.id }}.

{% endif %}
{% endif %}

Alternative option: open an OMERO.table

OMERO.tables can be opened in BioFile Finder. They will be dynamically converted to Parquet files when loaded by BioFile Finder. Any Image column on the OMERO.table will be used to add `Thumbnail` and `File Path` columns required by BioFile Finder.

{% if table_anns %} {% else %}

No OMERO.table files currently attached to {{ target.dtype | capfirst }}:{{ target.id }}.

{% endif %}

Using Biofile Finder

In BioFile Finder, you can open selected Images in the OMERO webclient by using the "Open File" button and choosing "Browser".

Open File in Browser {% endblock %} {% block extra_js %} {% endblock %}