LICENSE
MANIFEST.in
README.md
environment.yml
pyproject.toml
docs/cofactors.md
docs/dynamics.md
docs/inputs.md
docs/methods.md
docs/results.md
docs/running.md
docs/validation.md
tests/test_batch.py
tests/test_cli.py
tests/test_dynamics.py
tests/test_ensemble.py
tests/test_ff_bounds.py
tests/test_geometry.py
tests/test_hetero.py
tests/test_inputs.py
tests/test_pipeline.py
tests/test_pipeline_api.py
tests/test_platform.py
tests/test_prepare.py
tests/test_real_systems.py
tests/test_reproducible.py
tests/test_scoring.py
tests/test_tunnel.py
tests/test_units.py
tests/test_viz.py
tests/data/LinB_WT.pdb
tests/data/caverweb_tunnel.dsd
tests/data/mgltools_ligand_dbe.pdbqt
tests/data/mgltools_receptor_linb.pdbqt
tunnelprofile/__init__.py
tunnelprofile/__main__.py
tunnelprofile/_rescore_worker.py
tunnelprofile/batch.py
tunnelprofile/cli.py
tunnelprofile/cofactor.py
tunnelprofile/dynamics.py
tunnelprofile/ensemble.py
tunnelprofile/geometry.py
tunnelprofile/lb.py
tunnelprofile/metad.py
tunnelprofile/omm.py
tunnelprofile/pipeline.py
tunnelprofile/prepare.py
tunnelprofile/profile.py
tunnelprofile/py.typed
tunnelprofile/refine.py
tunnelprofile/smd.py
tunnelprofile/tunnel.py
tunnelprofile/viz.py
tunnelprofile.egg-info/PKG-INFO
tunnelprofile.egg-info/SOURCES.txt
tunnelprofile.egg-info/dependency_links.txt
tunnelprofile.egg-info/entry_points.txt
tunnelprofile.egg-info/requires.txt
tunnelprofile.egg-info/top_level.txt