# Dependencies required for running the "loose" version of alphaDIA.
# All dependencies that are also included in `requirements.txt` must be added also here (enforced by a test).
numba
argparse
alpharaw>=0.3.1  # test: tolerate_version
alphatims
# TODO remove once compatible with alphabase>=1.5.0
alphabase>=1.5.0 # test: tolerate_version
peptdeep>=1.3.0 # test: tolerate_version
dask==2024.11.2 # test: tolerate_version
progressbar
neptune
seaborn
rocket_fft
xxhash
torchmetrics
transformers<=4.40.2 # test: tolerate_version
directlfq
pythonnet
zstandard
numpy<2 # test: tolerate_version avoid the breaking change in numpy >= 2
scipy>=1.12.0 # test: tolerate_version
