Metadata-Version: 2.2
Name: verkkofillet
Version: 0.1.8
Summary: A toolkit for cleaning Verkko assemblies.
Home-page: https://github.com/jjuhyunkim/verkko-fillet
Author: Juhyun Kim
Author-email: kimj75@nih.gov
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Requires-Python: >=3.9
Description-Content-Type: text/markdown
Dynamic: author
Dynamic: author-email
Dynamic: classifier
Dynamic: description
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# verkko-fillet : post verkko graph and assembly cleaning in Python

verkko-fillet is an easy-to-use toolkit for cleaning [Verkko](https://github.com/marbl/verkko) assemblies. It includes tools for generating the Verkko-Fillet object, performing assembly quality checks, identifying gaps, assigning chromosomes, searching for ONT reads to help resolve gaps, filling gaps, and generating the final Rukki path (in a GAF-like format) for future Verkko CNS runs.

This Python-based implementation streamlines the entire process, starting right after the Verkko assembly is completed and preparing for the CNS run.

