LICENSE
README.md
pyproject.toml
schema_crush/__init__.py
schema_crush/cli.py
schema_crush.egg-info/PKG-INFO
schema_crush.egg-info/SOURCES.txt
schema_crush.egg-info/dependency_links.txt
schema_crush.egg-info/entry_points.txt
schema_crush.egg-info/requires.txt
schema_crush.egg-info/top_level.txt
schema_crush/data/calibrators/pkl/biobert_flat_calibrator.pkl
schema_crush/data/calibrators/pkl/magneto_flat_calibrator.pkl
schema_crush/data/calibrators/pkl/rule_flat_calibrator.pkl
schema_crush/data/db/feedback.db
schema_crush/data/db/flat_mappings.db
schema_crush/data/raw_content_maps/code/cda_transformer.py
schema_crush/data/resources/bmeg_iceberg_structural_linkml_schema.yaml
schema_crush/data/resources/gdc_mapping/case.json
schema_crush/data/resources/gdc_mapping/file.json
schema_crush/data/resources/gdc_mapping/project.json
schema_crush/data/resources/htan_mapping/mappings.json
schema_crush/knowledge/__init__.py
schema_crush/knowledge/mapping_rules/__init__.py
schema_crush/knowledge/mapping_rules/base.py
schema_crush/knowledge/mapping_rules/database.py
schema_crush/knowledge/mapping_rules/gdc_parser.py
schema_crush/knowledge/mapping_rules/htan_parser.py
schema_crush/knowledge/rules/fhir_template_rules.md
schema_crush/knowledge/rules/fhir_transformation_rules.md
schema_crush/learning/__init__.py
schema_crush/learning/feedback_store.py
schema_crush/learning/knowledge_base.py
schema_crush/learning/vector_store.py
schema_crush/loaders/__init__.py
schema_crush/loaders/base.py
schema_crush/loaders/csv_loader.py
schema_crush/loaders/curated_loader.py
schema_crush/loaders/fhir_aggregator_loader.py
schema_crush/loaders/project_loader.py
schema_crush/mappings/__init__.py
schema_crush/mappings/content_loader.py
schema_crush/mappings/expert_embeddings.py
schema_crush/mappings/flat.py
schema_crush/mappings/flat_loader.py
schema_crush/mappings/normalizer.py
schema_crush/mappings/legacy/base.py
schema_crush/mappings/legacy/database.py
schema_crush/mappings/legacy/gdc_loader.py
schema_crush/mappings/legacy/htan_loader.py
schema_crush/mcp/__init__.py
schema_crush/mcp/server.py
schema_crush/orchestrator/__init__.py
schema_crush/orchestrator/calibration.py
schema_crush/orchestrator/pearl_agent.py
schema_crush/orchestrator/schema_utils.py
schema_crush/orchestrator/agents/__init__.py
schema_crush/orchestrator/agents/base_agent.py
schema_crush/orchestrator/agents/claude_agent.py
schema_crush/orchestrator/agents/csv_profiler.py
schema_crush/orchestrator/agents/tools.py
schema_crush/tools/__init__.py
schema_crush/tools/fhir_schema_tool.py
schema_crush/tools/embeddings/__init__.py
schema_crush/tools/embeddings/biobert_embedder.py
schema_crush/tools/embeddings/magneto_embedder.py
schema_crush/tools/matchers/__init__.py
schema_crush/tools/matchers/base.py
schema_crush/tools/matchers/biobert_matcher.py
schema_crush/tools/matchers/magneto_matcher.py
schema_crush/tools/matchers/rule_matcher.py
tests/test_biobert_embedder.py
tests/test_claude_agent.py
tests/test_gdc_evaluation.py
tests/test_magneto_embedder.py
tests/test_mapping_rules.py
tests/test_matchers.py
tests/test_pearl_agent.py
tests/test_pearl_agent_hitl.py