cffi
edlib
h5py
intervaltree
numpy>=2.0
ont-mappy
ont_fast5_api
ont-parasail
packaging
pysam<=0.23.0,>=0.16.0.1
pyspoa>=0.2.1
requests
tensordict
toml
torch~=2.9
tqdm
wurlitzer

[abpoa]
pyabpoa==1.5.6
