LICENSE
README.md
pyproject.toml
./deepbuilder/__init__.py
./deepbuilder/cli.py
./deepbuilder/config/__init__.py
./deepbuilder/config/default.yaml
./deepbuilder/config/resource_modes.py
./deepbuilder/config/sci_modeling_bench.yaml
./deepbuilder/config/settings.py
./deepbuilder/config/defaults/agent.yaml
./deepbuilder/config/defaults/evaluator.yaml
./deepbuilder/config/defaults/exec.yaml
./deepbuilder/config/defaults/repl.yaml
./deepbuilder/config/defaults/tool.yaml
./deepbuilder/config/defaults/workspace.yaml
./deepbuilder/config/defaults/lnr/context.yaml
./deepbuilder/config/defaults/lnr/estra-magent.yaml
./deepbuilder/config/defaults/lnr/estra.yaml
./deepbuilder/config/defaults/lnr/index.yaml
./deepbuilder/config/defaults/lnr/resource-arbiter.yaml
./deepbuilder/config/defaults/lnr/resource-gpu.yaml
./deepbuilder/config/defaults/lnr/resource-guards.yaml
./deepbuilder/config/defaults/lnr/resource-monitor.yaml
./deepbuilder/config/defaults/lnr/runtime.yaml
./deepbuilder/config/defaults/lnr/selection.yaml
./deepbuilder/config/defaults/lnr/skills.yaml
./deepbuilder/config/defaults/lnr/snapshots.yaml
./deepbuilder/config/defaults/lnr/stage.yaml
./deepbuilder/config/defaults/lnr/workspace.yaml
./deepbuilder/config/examples/README.md
./deepbuilder/config/examples/lnr_config_overlay_example.yaml
./deepbuilder/config/examples/tasks_circle_packing_example.yaml
./deepbuilder/config/examples/tasks_example.yaml
./deepbuilder/config/examples/tasks_lnr_parallel_example.yaml
./deepbuilder/config/examples/tasks_prep_example.yaml
./deepbuilder/config/examples/tasks_sci_modeling_bench_tfbind8_example.yaml
./deepbuilder/config/examples/tasks_unified_evaluator_example.yaml
./deepbuilder/config/examples/empty_input/README.md
./deepbuilder/config/runs/sci_modeling_bench/drugmatrix-chloride.yaml
./deepbuilder/config/runs/sci_modeling_bench/drugmatrix-creatinine.yaml
./deepbuilder/config/runs/sci_modeling_bench/drugmatrix-mch.yaml
./deepbuilder/config/runs/sci_modeling_bench/drugmatrix-mchc.yaml
./deepbuilder/config/runs/sci_modeling_bench/drugmatrix-phosphorus.yaml
./deepbuilder/config/runs/sci_modeling_bench/drugmatrix-sodium.yaml
./deepbuilder/config/runs/sci_modeling_bench/gfp.yaml
./deepbuilder/config/runs/sci_modeling_bench/hopper-controller.yaml
./deepbuilder/config/runs/sci_modeling_bench/superconductor.yaml
./deepbuilder/config/runs/sci_modeling_bench/tfbind10-pho4.yaml
./deepbuilder/config/runs/sci_modeling_bench/tfbind8.yaml
./deepbuilder/config/runs/sci_modeling_bench/utr-mrl.yaml
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deepbuilder/__init__.py
deepbuilder/cli.py
deepbuilder.egg-info/PKG-INFO
deepbuilder.egg-info/SOURCES.txt
deepbuilder.egg-info/dependency_links.txt
deepbuilder.egg-info/entry_points.txt
deepbuilder.egg-info/requires.txt
deepbuilder.egg-info/top_level.txt
deepbuilder/config/__init__.py
deepbuilder/config/default.yaml
deepbuilder/config/resource_modes.py
deepbuilder/config/sci_modeling_bench.yaml
deepbuilder/config/settings.py
deepbuilder/config/defaults/agent.yaml
deepbuilder/config/defaults/evaluator.yaml
deepbuilder/config/defaults/exec.yaml
deepbuilder/config/defaults/repl.yaml
deepbuilder/config/defaults/tool.yaml
deepbuilder/config/defaults/workspace.yaml
deepbuilder/config/defaults/lnr/context.yaml
deepbuilder/config/defaults/lnr/estra-magent.yaml
deepbuilder/config/defaults/lnr/estra.yaml
deepbuilder/config/defaults/lnr/index.yaml
deepbuilder/config/defaults/lnr/resource-arbiter.yaml
deepbuilder/config/defaults/lnr/resource-gpu.yaml
deepbuilder/config/defaults/lnr/resource-guards.yaml
deepbuilder/config/defaults/lnr/resource-monitor.yaml
deepbuilder/config/defaults/lnr/runtime.yaml
deepbuilder/config/defaults/lnr/selection.yaml
deepbuilder/config/defaults/lnr/skills.yaml
deepbuilder/config/defaults/lnr/snapshots.yaml
deepbuilder/config/defaults/lnr/stage.yaml
deepbuilder/config/defaults/lnr/workspace.yaml
deepbuilder/config/examples/README.md
deepbuilder/config/examples/lnr_config_overlay_example.yaml
deepbuilder/config/examples/tasks_circle_packing_example.yaml
deepbuilder/config/examples/tasks_example.yaml
deepbuilder/config/examples/tasks_lnr_parallel_example.yaml
deepbuilder/config/examples/tasks_prep_example.yaml
deepbuilder/config/examples/tasks_sci_modeling_bench_tfbind8_example.yaml
deepbuilder/config/examples/tasks_unified_evaluator_example.yaml
deepbuilder/config/examples/empty_input/README.md
deepbuilder/config/runs/sci_modeling_bench/drugmatrix-chloride.yaml
deepbuilder/config/runs/sci_modeling_bench/drugmatrix-creatinine.yaml
deepbuilder/config/runs/sci_modeling_bench/drugmatrix-mch.yaml
deepbuilder/config/runs/sci_modeling_bench/drugmatrix-mchc.yaml
deepbuilder/config/runs/sci_modeling_bench/drugmatrix-phosphorus.yaml
deepbuilder/config/runs/sci_modeling_bench/drugmatrix-sodium.yaml
deepbuilder/config/runs/sci_modeling_bench/gfp.yaml
deepbuilder/config/runs/sci_modeling_bench/hopper-controller.yaml
deepbuilder/config/runs/sci_modeling_bench/superconductor.yaml
deepbuilder/config/runs/sci_modeling_bench/tfbind10-pho4.yaml
deepbuilder/config/runs/sci_modeling_bench/tfbind8.yaml
deepbuilder/config/runs/sci_modeling_bench/utr-mrl.yaml
deepbuilder/core/__init__.py
deepbuilder/core/agent_runtime.py
deepbuilder/core/artifact_io.py
deepbuilder/core/bash_solution_cmd.py
deepbuilder/core/key_pool.py
deepbuilder/core/llm_http.py
deepbuilder/core/llm_reasoning_compat.py
deepbuilder/core/llm_usage.py
deepbuilder/core/message_bus.py
deepbuilder/core/metric.py
deepbuilder/core/orchestrator.py
deepbuilder/core/parallel_runner.py
deepbuilder/core/runtime_env.py
deepbuilder/core/subprocess_utils.py
deepbuilder/core/task_package.py
deepbuilder/core/agent/__init__.py
deepbuilder/core/agent/agent.py
deepbuilder/core/agent/registry.py
deepbuilder/core/agent/run_policy.py
deepbuilder/core/agent/io/__init__.py
deepbuilder/core/agent/io/interaction_log.py
deepbuilder/core/agent/io/interaction_log_policy.py
deepbuilder/core/agent/memory/__init__.py
deepbuilder/core/agent/memory/memory_utils.py
deepbuilder/core/agent/memory/reasoning_replay.py
deepbuilder/core/agent/memory/resource_feedback_memory.py
deepbuilder/core/agent/prompts/README.md
deepbuilder/core/agent/prompts/__init__.py
deepbuilder/core/agent/prompts/system_prompt.py
deepbuilder/core/agent/prompts/write_coaching.py
deepbuilder/core/agent/prompts/L0/README.md
deepbuilder/core/agent/prompts/L0/code_agent_core.md
deepbuilder/core/agent/prompts/L0/code_agent_core_bash_write.md
deepbuilder/core/agent/prompts/L0/default_system.md
deepbuilder/core/agent/prompts/L0/default_system_bash_write.md
deepbuilder/core/agent/prompts/L0/tool_policy_parallel.md
deepbuilder/core/agent/prompts/L0/tool_policy_parallel_bash_write.md
deepbuilder/core/agent/prompts/L0/tool_policy_single.md
deepbuilder/core/agent/prompts/L0/tool_policy_single_bash_write.md
deepbuilder/core/agent/run_control/__init__.py
deepbuilder/core/agent/run_control/embedded_fullrun.py
deepbuilder/core/agent/runtime/__init__.py
deepbuilder/core/agent/runtime/llm_stream.py
deepbuilder/core/agent/runtime/lnr_hooks.py
deepbuilder/core/agent/runtime/recovery.py
deepbuilder/core/agent/runtime/repl_helpers.py
deepbuilder/core/agent/runtime/run_loop.py
deepbuilder/core/agent/shared/__init__.py
deepbuilder/core/agent/shared/constants.py
deepbuilder/core/agent/tool_exec/__init__.py
deepbuilder/core/agent/tool_exec/parallel.py
deepbuilder/core/agent/tool_exec/parallel_bash.py
deepbuilder/core/agent/tool_exec/parallel_readonly.py
deepbuilder/core/agent/tool_exec/sequential.py
deepbuilder/core/agent/tool_exec/single.py
deepbuilder/core/agent/tools/__init__.py
deepbuilder/core/agent/tools/bash_command_classifier.py
deepbuilder/core/agent/tools/bash_utils.py
deepbuilder/core/agent/tools/tool_guards.py
deepbuilder/core/agent/tools/tool_output_artifacts.py
deepbuilder/core/executor/__init__.py
deepbuilder/core/executor/base.py
deepbuilder/core/executor/dep_utils.py
deepbuilder/core/executor/interpreter.py
deepbuilder/core/executor/output_parser.py
deepbuilder/core/executor/python_runner.py
deepbuilder/core/executor/sandbox.py
deepbuilder/core/executor/shell_executor.py
deepbuilder/core/mem/__init__.py
deepbuilder/core/mem/memory_context.py
deepbuilder/core/mem/source_snapshot.py
deepbuilder/core/monitor/__init__.py
deepbuilder/core/monitor/cpu_monitor.py
deepbuilder/core/monitor/gpu_monitor.py
deepbuilder/core/monitor/performance_analyzer.py
deepbuilder/core/monitor/process_tracker.py
deepbuilder/core/skills/__init__.py
deepbuilder/core/skills/base.py
deepbuilder/core/skills/injector.py
deepbuilder/core/skills/matcher.py
deepbuilder/core/skills/paths.py
deepbuilder/core/skills/registry.py
deepbuilder/core/tools/__init__.py
deepbuilder/core/tools/bash_tool.py
deepbuilder/core/tools/edit_tool.py
deepbuilder/core/tools/file_utils.py
deepbuilder/core/tools/glob_tool.py
deepbuilder/core/tools/grep_tool.py
deepbuilder/core/tools/ls_tool.py
deepbuilder/core/tools/read_tool.py
deepbuilder/core/tools/resource_classifier.py
deepbuilder/core/tools/resource_timeout_feedback.py
deepbuilder/core/tools/resource_wait_tool.py
deepbuilder/core/tools/shadow_workspace.py
deepbuilder/core/tools/skill_tool.py
deepbuilder/core/tools/tool_collection.py
deepbuilder/core/tools/write_placeholder.py
deepbuilder/core/tools/write_tool.py
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deepbuilder/safety/stdout_checker.py
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deepbuilder/safety/resource/completion.py
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deepbuilder/safety/resource/process_lifecycle.py
deepbuilder/safety/resource/review_boundary.py
deepbuilder/safety/resource/review_outcome.py
deepbuilder/safety/resource/review_signal.py
deepbuilder/safety/resource/review_state.py
deepbuilder/safety/resource/signals.py
deepbuilder/solver/__init__.py
deepbuilder/solver/data_prep.py
deepbuilder/solver/lnr/__init__.py
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deepbuilder/solver/lnr/prompt_templates/estra/estra_resume.md
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deepbuilder/solver/lnr/resource_runtime/admission.py
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deepbuilder/solver/lnr/resource_runtime/control_profile.py
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deepbuilder/solver/lnr/resource_runtime/startup_trial.py
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deepbuilder/solver/lnr/resource_runtime/workspace_gpu_guard.py
deepbuilder/solver/lnr/resource_runtime/observer/__init__.py
deepbuilder/solver/lnr/resource_runtime/observer/controller.py
deepbuilder/solver/lnr/resource_runtime/review/__init__.py
deepbuilder/solver/lnr/resource_runtime/review/arbiter.py
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deepbuilder/solver/lnr/resource_runtime/review/lease_suspect.py
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deepbuilder/solver/lnr/resource_runtime/review/research_cadence.py
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deepbuilder/solver/lnr/resume/__init__.py
deepbuilder/solver/lnr/resume/continuation.py
deepbuilder/solver/lnr/resume/memory_state.py
deepbuilder/solver/lnr/stage/__init__.py
deepbuilder/solver/lnr/stage/metric_adjudication.py
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deepbuilder/solver/lnr/stage/metric_validity.py
deepbuilder/solver/lnr/stage/peer_context.py
deepbuilder/solver/lnr/stage/score_summary.py
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deepbuilder/ui/console.py
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deepbuilder/ui/monitor/lnr_state.py
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deepbuilder/ui/monitor_trace/assets.py
deepbuilder/ui/monitor_trace/builder.py
deepbuilder/ui/monitor_trace/leaderboard.py
deepbuilder/ui/monitor_trace/models.py
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deepbuilder/ui/monitor_trace/runner.py
deepbuilder/utils/__init__.py
deepbuilder/utils/cost_tracker.py
deepbuilder/utils/data_scan.py
deepbuilder/utils/env_bootstrap.py
deepbuilder/utils/formatting.py
deepbuilder/utils/llm_config_summary.py
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deepbuilder/utils/logging.py
deepbuilder/utils/node_paths.py
deepbuilder/utils/quick_test_perf.py
deepbuilder/utils/resource_utils.py
deepbuilder/utils/stage_tool_index.py
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deepcraft/core/deepcraft_core/memory/record.py
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deepcraft/core/deepcraft_core/storage/dbconfig.py
deepcraft/core/deepcraft_core/storage/redis_client.py
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deepcraft/core/deepcraft_core/storage/kv_storage/base.py
deepcraft/core/deepcraft_core/storage/kv_storage/in_memory.py
deepcraft/core/deepcraft_core/storage/kv_storage/json_impl.py
deepcraft/core/deepcraft_core/storage/vector_db/__init__.py
deepcraft/core/deepcraft_core/storage/vector_db/base.py
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deepcraft/core/deepcraft_core/storage/vector_db/stopwords.txt
deepcraft/core/deepcraft_core/tool/__init__.py
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deepcraft/core/deepcraft_core/tool/mcp.py
deepcraft/core/deepcraft_core/tool/tool_collection.py
deepcraft/core/deepcraft_core/tool/web_api.py
deepcraft/core/deepcraft_core/tracker/__init__.py
deepcraft/core/deepcraft_core/tracker/token_usage.py
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deepcraft/tool_ext/deepcraft_tool_ext/web_search/google_search.py
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