.gitignore
.readthedocs.yaml
README.md
mkdocs.yml
package-test-results-2026-09-04.md
pyproject.toml
.github/workflows/publish.yml
conda-recipe/meta.yaml
docs/changelog.md
docs/commands.md
docs/configuration.md
docs/index.md
docs/input-output.md
docs/install.md
docs/peak2anno-subcommands.svg
docs/requirements.txt
src/peak2anno/__init__.py
src/peak2anno/_version.py
src/peak2anno/cli.py
src/peak2anno/config.py
src/peak2anno/db.py
src/peak2anno/features.py
src/peak2anno/intervals.py
src/peak2anno/loops.py
src/peak2anno/peak2gene.py
src/peak2anno/plots.py
src/peak2anno/runtime.py
src/sjcab_peak2anno.egg-info/PKG-INFO
src/sjcab_peak2anno.egg-info/SOURCES.txt
src/sjcab_peak2anno.egg-info/dependency_links.txt
src/sjcab_peak2anno.egg-info/entry_points.txt
src/sjcab_peak2anno.egg-info/requires.txt
src/sjcab_peak2anno.egg-info/scm_file_list.json
src/sjcab_peak2anno.egg-info/scm_version.json
src/sjcab_peak2anno.egg-info/top_level.txt
tests/test_package.py
tests_data/peaks.bed
tests_data/tss.bed