Where Digital
Meets Biological

from vibedna import DNAEncoder, DNADecoder, DNAFileSystem
from vibedna.core.encoder import EncodingConfig, EncodingScheme

# Initialize encoder with configuration
config = EncodingConfig(scheme=EncodingScheme.QUATERNARY)
encoder = DNAEncoder(config)

# Encode data to DNA
dna_sequence = encoder.encode(
    b"Hello, DNA World!",
    filename="hello.txt"
)
print(f"Encoded: {dna_sequence[:50]}...")

# Decode back to original data
decoder = DNADecoder()
result = decoder.decode(dna_sequence)
print(f"Decoded: {result.data}")
print(f"Filename: {result.filename}")

# DNA File System usage
fs = DNAFileSystem()
fs.create_file("/docs/report.txt", b"Report content")
data = fs.read_file("/docs/report.txt")

# DNA Computation
from vibedna.compute import DNALogicGates
gates = DNALogicGates()
result = gates.xor("ATCG", "GCTA")
print(f"XOR Result: {result}")

# Start the API server
uvicorn vibedna.api.rest_server:app --host 0.0.0.0 --port 8000

# Encode data (base64 input)
curl -X POST "http://localhost:8000/encode" \
  -H "Content-Type: application/json" \
  -d '{
    "data": "SGVsbG8gV29ybGQh",
    "filename": "hello.txt",
    "scheme": "quaternary"
  }'

# Quick encode text
curl -X POST "http://localhost:8000/quick/encode" \
  -H "Content-Type: application/json" \
  -d '{"text": "Hello World"}'

# Decode DNA sequence
curl -X POST "http://localhost:8000/decode" \
  -H "Content-Type: application/json" \
  -d '{"sequence": "ATCGATCG..."}'

# Perform DNA computation
curl -X POST "http://localhost:8000/compute" \
  -H "Content-Type: application/json" \
  -d '{
    "operation": "XOR",
    "sequence_a": "ATCGATCG",
    "sequence_b": "GCTAGCTA"
  }'

# Pull the VibeDNA image
docker pull vibedna/vibedna:latest

# Run the API server
docker run -p 8000:8000 vibedna/vibedna

# Run CLI commands via Docker
docker run vibedna/vibedna vibedna encode /data/file.pdf

# Build from source
docker build -t vibedna .

# Run with volume mount for file access
docker run -v $(pwd)/data:/data \
  -p 8000:8000 \
  vibedna/vibedna

# Docker Compose for full stack
docker-compose up -d