Metadata-Version: 2.4
Name: stagate-modern
Version: 1.0.0.post1
Summary: Maintained STAGATE graph-attention autoencoder for spatial transcriptomics
Author: Kangning Dong
Maintainer: ChatSpatial maintainers
License-Expression: MIT
Project-URL: Homepage, https://github.com/cafferychen777/STAGATE
Project-URL: Source, https://github.com/cafferychen777/STAGATE
Project-URL: Original source, https://github.com/QIFEIDKN/STAGATE
Keywords: spatial transcriptomics,graph attention,STAGATE
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Science/Research
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Classifier: Programming Language :: Python :: 3.13
Classifier: Programming Language :: Python :: 3.14
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >=3.11
Description-Content-Type: text/markdown
License-File: LICENSE
License-File: NOTICE.md
Requires-Dist: anndata<0.13,>=0.10
Requires-Dist: numpy<3,>=1.26
Requires-Dist: pandas<4,>=2.0
Requires-Dist: scikit-learn<2,>=1.3
Requires-Dist: scipy<2,>=1.11
Requires-Dist: torch<3,>=2.1
Requires-Dist: torch-geometric<3,>=2.4
Requires-Dist: tqdm<5,>=4.65
Dynamic: license-file

# STAGATE Modern

This is a maintained distribution of the original
[STAGATE](https://github.com/QIFEIDKN/STAGATE) graph-attention autoencoder for
spatial transcriptomics.

The import name remains `STAGATE_pyG`, while the distribution is published as
`stagate-modern`:

```bash
python -m pip install stagate-modern
```

This distribution keeps the algorithmic path used by ChatSpatial and removes
the unreachable `torch_sparse.SparseTensor` branch. STAGATE constructs ordinary
PyTorch edge-index tensors, so the compiled and increasingly difficult to
install `torch-sparse` package is not required.

The maintained public API is:

- `Cal_Spatial_Net`
- `Stats_Spatial_Net`
- `train_STAGATE`
- `STAGATE`

The original authors and publication are credited in [NOTICE.md](NOTICE.md).
