LICENSE
README.md
pyproject.toml
src/dmeth/__init__.py
src/dmeth.egg-info/PKG-INFO
src/dmeth.egg-info/SOURCES.txt
src/dmeth.egg-info/dependency_links.txt
src/dmeth.egg-info/requires.txt
src/dmeth.egg-info/top_level.txt
src/dmeth/config/__init__.py
src/dmeth/config/config_manager.py
src/dmeth/core/__init__.py
src/dmeth/core/data_preprocessing.py
src/dmeth/core/planner.py
src/dmeth/core/analysis/__init__.py
src/dmeth/core/analysis/core_analysis.py
src/dmeth/core/analysis/postprocessing.py
src/dmeth/core/analysis/preparation.py
src/dmeth/core/analysis/validation.py
src/dmeth/core/downstream/__init__.py
src/dmeth/core/downstream/annotation.py
src/dmeth/core/downstream/deconvolution.py
src/dmeth/core/downstream/downstream_stats.py
src/dmeth/core/downstream/helpers.py
src/dmeth/core/downstream/signature.py
src/dmeth/io/__init__.py
src/dmeth/io/data_utils.py
src/dmeth/io/readers.py
src/dmeth/io/writers.py
src/dmeth/utils/__init__.py
src/dmeth/utils/logger.py
src/dmeth/utils/plotting.py
tests/test_data_preprocessing.py
tests/test_differential_analysis.py
tests/test_downstream_analysis.py
tests/test_io.py
tests/test_planner.py
tests/test_planner_config.py
tests/test_utils.py