numpy>=1.23
scipy>=1.10
pandas>=1.5
pyyaml>=6.0
typer>=0.9
rich>=13.0
networkx>=3.0

[all]
cobra>=0.29
matplotlib>=3.6
snakemake>=8.0
pytest>=7.0

[cobra]
cobra>=0.29

[dev]
pytest>=7.0
pytest-cov
ruff

[ml]
torch>=2.0

[viz]
matplotlib>=3.6

[workflow]
snakemake>=8.0
