LICENSE
README.md
setup.py
reinvent_hitl.egg-info/PKG-INFO
reinvent_hitl.egg-info/SOURCES.txt
reinvent_hitl.egg-info/dependency_links.txt
reinvent_hitl.egg-info/top_level.txt
running_modes/__init__.py
running_modes/manager.py
running_modes/automated_curriculum_learning/__init__.py
running_modes/automated_curriculum_learning/automated_curriculum_runner.py
running_modes/automated_curriculum_learning/actions/__init__.py
running_modes/automated_curriculum_learning/actions/base_action.py
running_modes/automated_curriculum_learning/actions/base_sample_action.py
running_modes/automated_curriculum_learning/actions/lib_invent_sample_model.py
running_modes/automated_curriculum_learning/actions/link_invent_sample_model.py
running_modes/automated_curriculum_learning/actions/reinvent_sample_model.py
running_modes/automated_curriculum_learning/curriculum_strategy/__init__.py
running_modes/automated_curriculum_learning/curriculum_strategy/base_curriculum_strategy.py
running_modes/automated_curriculum_learning/curriculum_strategy/curriculum_strategy.py
running_modes/automated_curriculum_learning/curriculum_strategy/linkinvent_curriculum_strategy.py
running_modes/automated_curriculum_learning/curriculum_strategy/no_curriculum_strategy.py
running_modes/automated_curriculum_learning/curriculum_strategy/reinvent_curriculum_strategy.py
running_modes/automated_curriculum_learning/dto/__init__.py
running_modes/automated_curriculum_learning/dto/curriculum_outcome_dto.py
running_modes/automated_curriculum_learning/dto/sampled_batch_dto.py
running_modes/automated_curriculum_learning/dto/sampled_sequences_dto.py
running_modes/automated_curriculum_learning/dto/timestep_dto.py
running_modes/automated_curriculum_learning/dto/updated_likelihoods_dto.py
running_modes/automated_curriculum_learning/inception/__init__.py
running_modes/automated_curriculum_learning/inception/inception.py
running_modes/automated_curriculum_learning/learning_strategy/__init__.py
running_modes/automated_curriculum_learning/learning_strategy/base_double_query_learning_strategy.py
running_modes/automated_curriculum_learning/learning_strategy/base_learning_strategy.py
running_modes/automated_curriculum_learning/learning_strategy/base_linker_strategy.py
running_modes/automated_curriculum_learning/learning_strategy/base_single_query_learning_strategy.py
running_modes/automated_curriculum_learning/learning_strategy/dap_single_query_strategy.py
running_modes/automated_curriculum_learning/learning_strategy/dap_strategy.py
running_modes/automated_curriculum_learning/learning_strategy/learning_strategy.py
running_modes/automated_curriculum_learning/learning_strategy/learning_strategy_configuration.py
running_modes/automated_curriculum_learning/learning_strategy/learning_strategy_enum.py
running_modes/automated_curriculum_learning/learning_strategy/mascof_strategy.py
running_modes/automated_curriculum_learning/learning_strategy/mauli_strategy.py
running_modes/automated_curriculum_learning/learning_strategy/sdap_strategy.py
running_modes/automated_curriculum_learning/logging/__init__.py
running_modes/automated_curriculum_learning/logging/auto_cl_logger.py
running_modes/automated_curriculum_learning/logging/base_logger.py
running_modes/automated_curriculum_learning/logging/console_message.py
running_modes/automated_curriculum_learning/logging/local_logger.py
running_modes/configurations/__init__.py
running_modes/configurations/general_configuration_envelope.py
running_modes/configurations/automated_curriculum_learning/__init__.py
running_modes/configurations/automated_curriculum_learning/automated_curriculum_learning_configuration.py
running_modes/configurations/automated_curriculum_learning/automated_curriculum_learning_input_configuration.py
running_modes/configurations/automated_curriculum_learning/automated_curriculum_learning_linkinvent_configuration.py
running_modes/configurations/automated_curriculum_learning/base_configuration.py
running_modes/configurations/automated_curriculum_learning/curriculum_objective.py
running_modes/configurations/automated_curriculum_learning/curriculum_strategy_configuration.py
running_modes/configurations/automated_curriculum_learning/curriculum_strategy_input_configuration.py
running_modes/configurations/automated_curriculum_learning/inception_configuration.py
running_modes/configurations/automated_curriculum_learning/linkinvent_curriculum_strategy_configuration.py
running_modes/configurations/automated_curriculum_learning/linkinvent_production_strategy_configuration.py
running_modes/configurations/automated_curriculum_learning/prodcution_strategy_input_configuration.py
running_modes/configurations/automated_curriculum_learning/production_strategy_configuration.py
running_modes/configurations/compound_sampling/__init__.py
running_modes/configurations/compound_sampling/sample_from_model_configuration.py
running_modes/configurations/create_model/__init__.py
running_modes/configurations/create_model/create_model_configuration.py
running_modes/configurations/create_model/link_invent_create_model_configuration.py
running_modes/configurations/curriculum_learning/__init__.py
running_modes/configurations/curriculum_learning/curriculum_learning_components.py
running_modes/configurations/curriculum_learning/curriculum_learning_configuration.py
running_modes/configurations/logging/__init__.py
running_modes/configurations/logging/base_log_config.py
running_modes/configurations/logging/create_model_log_configuration.py
running_modes/configurations/logging/curriculum_log_configuration.py
running_modes/configurations/logging/reinforcement_log_configuration.py
running_modes/configurations/logging/remote_logging.py
running_modes/configurations/logging/sampling_log_configuration.py
running_modes/configurations/logging/scoring_log_configuration.py
running_modes/configurations/logging/transfer_learning_log_configuration.py
running_modes/configurations/reinforcement_learning/__init__.py
running_modes/configurations/reinforcement_learning/inception_configuration.py
running_modes/configurations/reinforcement_learning/reinforcement_learning_components.py
running_modes/configurations/reinforcement_learning/reinforcement_learning_configuration.py
running_modes/configurations/scoring/__init__.py
running_modes/configurations/scoring/scoring_runner_components.py
running_modes/configurations/scoring/scoring_runner_configuration.py
running_modes/configurations/transfer_learning/__init__.py
running_modes/configurations/transfer_learning/adaptive_learning_rate_configuration.py
running_modes/configurations/transfer_learning/link_invent_learning_rate_configuration.py
running_modes/configurations/transfer_learning/link_invent_transfer_learning_configuration.py
running_modes/configurations/transfer_learning/transfer_learning_configuration.py
running_modes/constructors/__init__.py
running_modes/constructors/base_running_mode.py
running_modes/constructors/create_model_mode_constructor.py
running_modes/constructors/curriculum_learning_mode_constructor.py
running_modes/constructors/reinforcement_learning_mode_constructor.py
running_modes/constructors/running_mode.py
running_modes/constructors/sampling_mode_constructor.py
running_modes/constructors/scoring_mode_constructor.py
running_modes/constructors/transfer_learning_mode_constructor.py
running_modes/constructors/validation_mode_constructor.py
running_modes/create_model/__init__.py
running_modes/create_model/create_model.py
running_modes/create_model/link_invent_create_model.py
running_modes/create_model/logging/__init__.py
running_modes/create_model/logging/base_create_model_logger.py
running_modes/create_model/logging/create_model_logger.py
running_modes/create_model/logging/local_create_model_logger.py
running_modes/create_model/logging/remote_create_model_logger.py
running_modes/enums/__init__.py
running_modes/enums/adaptive_learning_rate_enum.py
running_modes/enums/curriculum_strategy_enum.py
running_modes/enums/curriculum_type_enum.py
running_modes/enums/logging_mode_enum.py
running_modes/enums/merging_strategy_enum.py
running_modes/enums/model_type_enum.py
running_modes/enums/production_strategy_enum.py
running_modes/enums/ranking_strategy_enum.py
running_modes/enums/running_mode_enum.py
running_modes/enums/scoring_runner_enum.py
running_modes/enums/scoring_table_enum.py
running_modes/reinforcement_learning/__init__.py
running_modes/reinforcement_learning/core_reinforcement_learning.py
running_modes/reinforcement_learning/inception.py
running_modes/reinforcement_learning/lib_invent_reinforcement_learning.py
running_modes/reinforcement_learning/link_invent_reinforcement_learning.py
running_modes/reinforcement_learning/margin_guard.py
running_modes/reinforcement_learning/actions/__init__.py
running_modes/reinforcement_learning/actions/base_action.py
running_modes/reinforcement_learning/actions/lib_invent_likelihood_evaluation.py
running_modes/reinforcement_learning/actions/lib_invent_sample_model.py
running_modes/reinforcement_learning/actions/link_invent_likelihood_evaluation.py
running_modes/reinforcement_learning/actions/link_invent_sample_model.py
running_modes/reinforcement_learning/configurations/__init__.py
running_modes/reinforcement_learning/configurations/learning_strategy_configuration.py
running_modes/reinforcement_learning/configurations/lib_invent_reinforcement_learning_configuration.py
running_modes/reinforcement_learning/configurations/lib_invent_scoring_strategy_configuration.py
running_modes/reinforcement_learning/configurations/link_invent_log_configuration.py
running_modes/reinforcement_learning/configurations/link_invent_reinforcement_learning_configuration.py
running_modes/reinforcement_learning/configurations/link_invent_scoring_strategy_congfiguration.py
running_modes/reinforcement_learning/configurations/scoring_strategy_configuration.py
running_modes/reinforcement_learning/dto/__init__.py
running_modes/reinforcement_learning/dto/sampled_sequences_dto.py
running_modes/reinforcement_learning/learning_strategy/__init__.py
running_modes/reinforcement_learning/learning_strategy/base_learning_strategy.py
running_modes/reinforcement_learning/learning_strategy/dap_strategy.py
running_modes/reinforcement_learning/learning_strategy/learning_strategy.py
running_modes/reinforcement_learning/learning_strategy/learning_strategy_enum.py
running_modes/reinforcement_learning/learning_strategy/mascof_strategy.py
running_modes/reinforcement_learning/learning_strategy/mauli_strategy.py
running_modes/reinforcement_learning/learning_strategy/sdap_strategy.py
running_modes/reinforcement_learning/logging/__init__.py
running_modes/reinforcement_learning/logging/base_reinforcement_logger.py
running_modes/reinforcement_learning/logging/console_message.py
running_modes/reinforcement_learning/logging/local_reinforcement_logger.py
running_modes/reinforcement_learning/logging/reinforcement_logger.py
running_modes/reinforcement_learning/logging/remote_reinforcement_logger.py
running_modes/reinforcement_learning/logging/link_logging/__init__.py
running_modes/reinforcement_learning/logging/link_logging/base_reinforcement_logger.py
running_modes/reinforcement_learning/logging/link_logging/bond_link_reinforcement_logger.py
running_modes/reinforcement_learning/logging/link_logging/console_message.py
running_modes/reinforcement_learning/logging/link_logging/local_bond_link_reinforcement_logger.py
running_modes/reinforcement_learning/logging/link_logging/remote_bond_link_reinforcement_logger.py
running_modes/reinforcement_learning/scoring_strategy/__init__.py
running_modes/reinforcement_learning/scoring_strategy/base_scoring_strategy.py
running_modes/reinforcement_learning/scoring_strategy/lib_invent_scoring_strategy.py
running_modes/reinforcement_learning/scoring_strategy/link_invent_scoring_strategy.py
running_modes/reinforcement_learning/scoring_strategy/scoring_strategy.py
running_modes/reinforcement_learning/scoring_strategy/scoring_strategy_enum.py
running_modes/sampling/__init__.py
running_modes/sampling/sample_from_model.py
running_modes/sampling/logging/__init__.py
running_modes/sampling/logging/base_sampling_logger.py
running_modes/sampling/logging/local_sampling_logger.py
running_modes/sampling/logging/remote_sampling_logger.py
running_modes/sampling/logging/sampling_logger.py
running_modes/scoring/__init__.py
running_modes/scoring/scoring_runner.py
running_modes/scoring/logging/__init__.py
running_modes/scoring/logging/base_scoring_logger.py
running_modes/scoring/logging/local_scoring_logger.py
running_modes/scoring/logging/remote_scoring_logger.py
running_modes/scoring/logging/scoring_logger.py
running_modes/transfer_learning/__init__.py
running_modes/transfer_learning/adaptive_learning_rate.py
running_modes/transfer_learning/link_invent_transfer_learning_runner.py
running_modes/transfer_learning/transfer_learning_runner.py
running_modes/transfer_learning/dto/__init__.py
running_modes/transfer_learning/dto/collected_stats_dto.py
running_modes/transfer_learning/dto/sampled_stats_dto.py
running_modes/transfer_learning/link_invent_actions/__init__.py
running_modes/transfer_learning/link_invent_actions/base_action.py
running_modes/transfer_learning/link_invent_actions/collect_stats.py
running_modes/transfer_learning/link_invent_actions/train_epoch.py
running_modes/transfer_learning/logging/__init__.py
running_modes/transfer_learning/logging/base_transfer_learning_logger.py
running_modes/transfer_learning/logging/local_link_invent_transfer_learning_logger.py
running_modes/transfer_learning/logging/local_transfer_learning_logger.py
running_modes/transfer_learning/logging/remote_transfer_learning_logger.py
running_modes/transfer_learning/logging/transfer_learning_logger.py
running_modes/utils/__init__.py
running_modes/utils/configuration.py
running_modes/utils/general.py
running_modes/validation/__init__.py
running_modes/validation/validation_runner.py
running_modes/validation/logging/__init__.py
running_modes/validation/logging/base_validation_logger.py
running_modes/validation/logging/local_validation_logger.py
running_modes/validation/logging/remote_validation_logger.py
running_modes/validation/logging/validation_logger.py
unittest_reinvent/__init__.py
unittest_reinvent/fixtures/__init__.py
unittest_reinvent/fixtures/paths.py
unittest_reinvent/fixtures/predictive_model_fixtures.py
unittest_reinvent/fixtures/test_data.py
unittest_reinvent/fixtures/utils.py
unittest_reinvent/running_modes/__init__.py
unittest_reinvent/running_modes/create_model_tests/__init__.py
unittest_reinvent/running_modes/create_model_tests/test_create_model.py
unittest_reinvent/running_modes/create_model_tests/test_link_invent_create_model.py
unittest_reinvent/running_modes/curriculum_tests/__init__.py
unittest_reinvent/running_modes/curriculum_tests/test_automated_curriculum_learning.py
unittest_reinvent/running_modes/curriculum_tests/test_manual_curriculum_learning.py
unittest_reinvent/running_modes/inception_tests/__init__.py
unittest_reinvent/running_modes/inception_tests/test_add.py
unittest_reinvent/running_modes/inception_tests/test_add_base.py
unittest_reinvent/running_modes/inception_tests/test_add_jaccard_distance.py
unittest_reinvent/running_modes/inception_tests/test_empty_add.py
unittest_reinvent/running_modes/inception_tests/test_empty_base.py
unittest_reinvent/running_modes/inception_tests/test_empty_eval_add_tanimoto.py
unittest_reinvent/running_modes/inception_tests/test_eval_add_tanimoto.py
unittest_reinvent/running_modes/lib_invent_tests/__init__.py
unittest_reinvent/running_modes/lib_invent_tests/learning_strategy_tests/__init__.py
unittest_reinvent/running_modes/lib_invent_tests/learning_strategy_tests/base_learning_strategy.py
unittest_reinvent/running_modes/lib_invent_tests/learning_strategy_tests/test_learning_strategy_dap_strategy.py
unittest_reinvent/running_modes/lib_invent_tests/learning_strategy_tests/test_learning_strategy_mascof_strategy.py
unittest_reinvent/running_modes/lib_invent_tests/learning_strategy_tests/test_learning_strategy_mauli_strategy.py
unittest_reinvent/running_modes/lib_invent_tests/learning_strategy_tests/test_learning_strategy_sdap_strategy.py
unittest_reinvent/running_modes/lib_invent_tests/logger_tests/__init__.py
unittest_reinvent/running_modes/lib_invent_tests/logger_tests/test_reinforcement_logger.py
unittest_reinvent/running_modes/lib_invent_tests/reinforcement_learning_tests/__init__.py
unittest_reinvent/running_modes/lib_invent_tests/reinforcement_learning_tests/test_reinforcement_learning_likelihood_evaluation.py
unittest_reinvent/running_modes/lib_invent_tests/reinforcement_learning_tests/test_reinforcement_learning_model.py
unittest_reinvent/running_modes/lib_invent_tests/scoring_strategy_tests/__init__.py
unittest_reinvent/running_modes/lib_invent_tests/scoring_strategy_tests/test_standard_scoring_strategy_no_reaction_filter.py
unittest_reinvent/running_modes/local_logger_tests/__init__.py
unittest_reinvent/running_modes/local_logger_tests/test_sampling_invalid_smiles.py
unittest_reinvent/running_modes/local_logger_tests/test_transfer_logger.py
unittest_reinvent/running_modes/model_validation_tests/__init__.py
unittest_reinvent/running_modes/model_validation_tests/test_model_validation.py
unittest_reinvent/running_modes/reinforcement_tests/__init__.py
unittest_reinvent/running_modes/reinforcement_tests/test_link_invent_reinforcement_learning_runner.py
unittest_reinvent/running_modes/reinforcement_tests/test_margin_guard.py
unittest_reinvent/running_modes/reinforcement_tests/test_margin_guard_adjust_guard.py
unittest_reinvent/running_modes/reinforcement_tests/test_margin_guard_adjust_guard_on_empty.py
unittest_reinvent/running_modes/reinforcement_tests/test_margin_guard_increase_sigma.py
unittest_reinvent/running_modes/reinforcement_tests/test_margin_guard_mean_stats.py
unittest_reinvent/running_modes/reinforcement_tests/test_margin_guard_threshold.py
unittest_reinvent/running_modes/reinforcement_tests/test_reinforce_tanimoto_similarity.py
unittest_reinvent/running_modes/sample_model_tests/__init__.py
unittest_reinvent/running_modes/sample_model_tests/test_sample_from_model.py
unittest_reinvent/running_modes/scoring_runner_tests/__init__.py
unittest_reinvent/running_modes/scoring_runner_tests/test_scoring_runner.py
unittest_reinvent/running_modes/transfer_learning_tests/__init__.py
unittest_reinvent/running_modes/transfer_learning_tests/test_link_invent_transfer_learning.py
unittest_reinvent/running_modes/transfer_learning_tests/test_transfer_learning.py