pen_stack/__init__.py,sha256=KCoEBgVyUpSQazTpaMXKHTTn_j70m6ki2xxRK4WQEC8,87
pen_stack/_resources.py,sha256=8A5SDvkx64AbSRnlyancO1SpZp5NNHd2hbrO0LrGteI,1578
pen_stack/cli.py,sha256=FLy8pwSQBnAqRJciS3_U_T31b91dKLjo3wEm0k4S6Ug,5745
pen_stack/adapt/__init__.py,sha256=zRwPjyDVQcK0hXoH4_qkotQfrOlJna9GnBd_3SUsIY0,791
pen_stack/adapt/finetune.py,sha256=EtjZFtBPYvBbH9g0oKWPAS2xCRVdHhqVtk7c5havQWM,1469
pen_stack/adapt/ingest.py,sha256=JjQx8zNe0H9hmeOAGrpq-JFCuVjoULFzXWLgy01cXyU,4447
pen_stack/adapt/pipeline.py,sha256=zs_fDAiv0LtuTTxwoIeCR9GjhvodviSpp1bwYQlNHb0,5389
pen_stack/adapt/recalibrate.py,sha256=MGdDWeROqUmcpz6mT-Pmlp3NPmUMs52zRNFm55-twtI,2403
pen_stack/adapt/report.py,sha256=ebYbtlMQ5wuJvNYwdeIHvgGZdWsVG3SbcI-mfIWN9QU,6343
pen_stack/agent/__init__.py,sha256=J05GUK7ymg7jY1fTvJ9lUgTGW-y4_7hBXuLIHDpt7bk,57
pen_stack/agent/guardrails.py,sha256=PF8hxBLbAEtU6vk0p3CiBARHw4cjEHYRF8kPWDuLTeQ,2644
pen_stack/agent/mcp_server.py,sha256=HYh-H3a29SuW7yqGEh3tDoPeMpLFSYIKOT2yM1dMj4U,1980
pen_stack/agent/orchestrator.py,sha256=BgCHijM1DjhtfwrM7F1VeS_akoU1QVAlJ_f6hd4RFmE,5585
pen_stack/agent/pen_agent.py,sha256=Q_hChhFgsVjk4MrP0UiVAIm6bX2WstCuX15No01PIxg,9097
pen_stack/agent/tools.py,sha256=CSvGexFtM6imFXjTjaMknt_MMwn3D6XaV7kxi7g0qmQ,6617
pen_stack/atlas/__init__.py,sha256=-XGrYvi4u2qIM5FTgukHweLjCDe3SQipKs7_HvxTKx4,57
pen_stack/atlas/build_wtkb.py,sha256=mBvm7swjqhFBkhrTKigT0ffLnzk-_d3h6qk9K0eoFHc,3177
pen_stack/atlas/crosslink.py,sha256=nJWvpk_0AtrUIZbBZ1C25Az1EgTQQuPwaYHpDwDYT3c,6432
pen_stack/atlas/expand.py,sha256=5SZt6tS3SLt9uZwEQ3YlYdoIzSIQ5MRX9QASttODRbw,8898
pen_stack/atlas/schema.py,sha256=VLAItD-uGjrsySscBNnjr_lvbf06lByK7gribD15ogs,2410
pen_stack/atlas/scorecard.py,sha256=cMkuUH3Ty_n8cSWL5EUfrMRouKskpkdx6Se3xyrGTPA,6136
pen_stack/atlas/universe.py,sha256=BgwMjFAPC5W5rCprPcte84qXIn3phlBCVBNltL2tRkY,3218
pen_stack/atlas/variant_propose.py,sha256=q5EJtKzrg2c7OQVTppdKn9Q0UwfJ_VTsJa3-tJBiXH0,8073
pen_stack/bridge/__init__.py,sha256=QOESbsA8NIBPC6dSFS5qBtVnLJ1Ipu3_dPJWQ_5CYcQ,58
pen_stack/bridge/activity.py,sha256=x4H2MoHw4sGp0o3Fe2xiDIjve7aGHNjVqbnJkgouI6s,2682
pen_stack/bridge/cli.py,sha256=qGTjYoW2KBvs6B2T5gx92ofLlONzOo_2xZR-uHyJoak,3072
pen_stack/bridge/fold_qc.py,sha256=CyX-zeoZPd6MRNfarQM4hbP8zw_TnHmMwenkFZHL5vE,2507
pen_stack/bridge/guide_qc.py,sha256=Qdc2rrz2DK8ODZKl9iii1LiSk6ETAk7cJwfLhqUrGnk,4491
pen_stack/bridge/ingest.py,sha256=43lk_6KrabZVMxpXN1EzB5fcUDtGfOHdPn8FSpq98Wc,6095
pen_stack/bridge/offtarget.py,sha256=jKUHog0J9Pwf9rtEKgVau_H6wyU1Gq7Ns32ae5uqb_I,6425
pen_stack/bridge/ortholog_screen.py,sha256=HHXq3WONaZgOmZicYzP56epy6L0vhBUhGBFcf98KIYI,3380
pen_stack/bridge/pipeline.py,sha256=-ebgqppDGSYLJ2t91IKifj96BGB4lfxf7BsUlsON2GU,3830
pen_stack/data/__init__.py,sha256=jpgYY9g7VwyFZXIifhlssZRt6b-ZUdxKR0dsmL_muBo,56
pen_stack/data/encode.py,sha256=n9sW_lJOJq5-niflG_Owd10PdZFePphcGrcno1s5T6c,3146
pen_stack/data/genome.py,sha256=X5KM1I6cfNM3wMBJVaesXMBgNEPeeSXQFIVpyMkqQhY,2419
pen_stack/data/ingest_chromatin.py,sha256=J4U1K_Y_U5dQRv6t5YKGw2mpW8JoHEMvFK5cew4j37w,4425
pen_stack/data/ingest_integration.py,sha256=QOVMbcrmcvELywA0vr_lSY13zNx7PdgpR3lmelm-WAk,5014
pen_stack/data/ingest_safety_annot.py,sha256=XMqXKImy9RjhwBq_N-V5S7b-e6MhNN9N3Xq5yBZDju0,6818
pen_stack/data/ingest_trip.py,sha256=IeH0TXEWHL3z1ahID235HZO_KHdUF8g7fpVtFpGJhV4,3733
pen_stack/mech/__init__.py,sha256=GAILAvLwDv8InNGMIWNRiFIQaXUOXrv5m0ssDgSguWw,56
pen_stack/mech/classify_atlas.py,sha256=OOxPCUj2qT9WMbsXjFx7CXNExFSSYvMlRBlruSWFHU0,3271
pen_stack/mech/whitelist.py,sha256=OPKvqXy5_D5iHqCL84dlxfREqHlQOTPjNzNYZb-cBHs,3329
pen_stack/monitor/__init__.py,sha256=6tXqDuWVhNxOulYgpoDs03Y8dUZshstJ774kcbzJp_M,59
pen_stack/monitor/europepmc.py,sha256=igxEZycVFEJVyXk9DNJKHYXaOHrWOKuwRn4zjVh99-Q,1374
pen_stack/monitor/run.py,sha256=WlQsy7HGu41HOy-O3EXe8DswcDTT2hElRgHzarg1x1k,2420
pen_stack/monitor/triage.py,sha256=clt0hTN-ZHRu2s_sQqwwifMBblzamGW9Abec_4wdoZc,2630
pen_stack/planner/__init__.py,sha256=rqXwN3F-726t6f1lFVTfozKlwo1A3SOOiI8TDyI-1QM,59
pen_stack/planner/cargo.py,sha256=sWPXpWKaz47OX7ylqhwjt78GtExBVYn7Owit-4i_SO4,2744
pen_stack/planner/cargo_polish.py,sha256=P_o4FFT_E3NEFf7I2JBG3KNEuwIA_SXb477IgAhtk94,6209
pen_stack/planner/delivery.py,sha256=yVk79c05qM359LQPV_vE1UU_NpPXX2AlSkq6Mm9ARKg,1293
pen_stack/planner/multiplex.py,sha256=zNWeGbJSrwEnFrGIl0SBMk0OfyfPt09TWZCfx1pdNOg,5960
pen_stack/planner/optimize.py,sha256=m8KtxFc7b1EuoVlhl7Sz20LSb0Gc9R_0rpZ-1UY1Xes,7330
pen_stack/planner/pipeline.py,sha256=PCxpxaKVhUwrAVmA1NFC6NWOIwtBssIKMLm8YRO4xyI,4162
pen_stack/planner/report.py,sha256=HsQ6EsyYwEd_406y5WTr_MIxmclz-KAQPYYk-Uj_37M,1335
pen_stack/rag/__init__.py,sha256=FR6Du4rVBnTVtrFXKCB-jhS-A_Z5L8nDTbbHyc4BSRo,55
pen_stack/rag/index.py,sha256=gUdOystdW9QYhnpdccq4CblUOXRCW9DeZ1s9c7otBAU,2400
pen_stack/rag/llm.py,sha256=-yfILBK78P43Gt5-GX9583G95N4gS0sMNfR5InePcwI,8072
pen_stack/rag/qa.py,sha256=P9cau4k55QTy4pExbVxulDHaihe8wFgcu4THpq5ap5o,5348
pen_stack/score/__init__.py,sha256=xxvDK6A2MiR3f9V8a7-LX0yxyq_s7yIgiKbF5iuQqok,57
pen_stack/score/recalibrate.py,sha256=G-YpuE-AOZuXTmQwop3ZhqWFgsVztC9a3SUXtlQxZZE,3100
pen_stack/score/therapeutic.py,sha256=iDsbLmoTLQ2MLmCwoGowbtNRkWJsSn6YSQNvcUrNwws,3620
pen_stack/server/__init__.py,sha256=zg0WieD0JB731SfZeMR73PgJOXTPmwMax1_x_JSx3CE,58
pen_stack/server/api.py,sha256=NdPX34VMoqKyJxs3U79-WhZSiFE988sLOZ_UGAkO_2Q,6323
pen_stack/ui/__init__.py,sha256=rsfdyJ87h36XaCqoUvhBm1x5IigUNEuGacxkZTsjkTE,54
pen_stack/ui/app.py,sha256=S1ZzQ0losBkRUxYmI3GJlFA1TpUDYndKP99TMPTNKKw,30815
pen_stack/validate/__init__.py,sha256=BEu8bTzGd42CFvtpaOag9_SU8VLQzN_pd0mkxZzu_xo,60
pen_stack/validate/adapt_demo.py,sha256=DMFVU2OD5TE91evE0H2r4MH4HrrbXyI20hACaM5VU7I,3925
pen_stack/validate/agent_eval.py,sha256=RwBW2kdNP4pSeDWOjQ_Cw9FVsgUdzaukkTm7REgA0eI,5994
pen_stack/validate/blind_gsh_discovery.py,sha256=NV1QVLMUsuNdIjM4TVOWdcXfReaGuacFpSI_fZuLxVs,8154
pen_stack/validate/cargo_directionality.py,sha256=Tlo673ySL3vGENryyv7JLq--UWLP_ioy_iP08BL8iWk,2851
pen_stack/validate/durability_baselines.py,sha256=LRKJLsDByLnFkwopXC84HBuibrOElKBncZbhqCeLGOs,8422
pen_stack/validate/forward_hypotheses.py,sha256=0uRhd7JcDgNitqzzo5SGSCiqhpA6OrvdN4xqT_ykpJg,5007
pen_stack/validate/guide_qc_demo.py,sha256=mRNr9JhGGp73js3Wj8gL-f6Hfi3rgiZZ1x1Zv3eM9AQ,2781
pen_stack/validate/intent_specification.py,sha256=OuoMYVR9Si1i0IOAm51Qx3NFbqurJlFFJcPi0qIGRRg,3626
pen_stack/validate/paper3_benchmark.py,sha256=xV9jAJpUBpVFozjX4OVHntaNAzpT1vgyqRgTtCKSu7s,8364
pen_stack/validate/paper4_real_validation.py,sha256=FoVtYFgsgtYEkoed-3c2mIp9wuKGiehJOGBubc1EFB4,6970
pen_stack/validate/paper4_validation.py,sha256=MmiDLu4GV-ouoNAj1QWgGCu5vcRDPpPogwWbREJYLJc,3904
pen_stack/validate/seq_vs_measured.py,sha256=LF342iF4aS48FK6dZW72iw2IAMqma-63UbD74Oudq2A,7288
pen_stack/validate/within_locus_ranking.py,sha256=ft2cAjjBR0Z92r7xEL1hoV5hBeazK9UeWSwwYxP89XM,3350
pen_stack/validate/writer_recovery.py,sha256=Lv5OaN-BW6vlnhxDp5zizW_9n0xB7XvIhjvN2EgKspA,4208
pen_stack/wgenome/__init__.py,sha256=enDHFWKOmEOoyO7BHh0MeM7WrZqyow3Y_EWQtoS6ONE,59
pen_stack/wgenome/chromatin_seq.py,sha256=BTlZ79DhM95My9WEO03Bfx__20W84VHaOxpibpb3Hg4,4095
pen_stack/wgenome/durability.py,sha256=zxfRNCm0Ba-o7uZRfS5IvHMWLVA4Wj-2LsY4Hgva8Pw,5273
pen_stack/wgenome/export_tracks.py,sha256=TbFIsieSXmC7oTkwD0LdsGQPEKlCu0KJETDavh_GTks,2037
pen_stack/wgenome/features.py,sha256=2IuAPB6PQbrOIwAKMIC4DTiv6op8r20sJYLs9WUuksw,3850
pen_stack/wgenome/gsh_baseline.py,sha256=24RWbtEs-X59iN5a91xfKJ-m5zkQQ3u7qRlV9qgq7gE,5939
pen_stack/wgenome/providers.py,sha256=0Vc7D2duge86YFK4Ub-WLwQess8LtgTMzGGcBmslylI,11703
pen_stack/wgenome/safety.py,sha256=j4cOxWEDgk0J7aXQgSRsFGq2kYGgXpiiqG-YVwODcI0,3204
pen_stack/wgenome/structure3d.py,sha256=jt0Cofbkjv_Rm4GP7nVX4BDQ1nGM-c8txl0Op-krEfE,9250
pen_stack/wgenome/writability.py,sha256=m6RlG01r0w_UmbV08puBqNwmbwbm4OvzHenFLR0GGtc,3424
pen_stack-3.1.0.dist-info/licenses/LICENSE,sha256=vxjNCQMsjGGvVRpJfJOg6RWHgXzyTwmxYUu0WF5jUbI,1081
pen_stack-3.1.0.dist-info/METADATA,sha256=C5ubcAyyQQnJRLfj05zkUWmOZK_-IuVZxk_r56FSdxE,32315
pen_stack-3.1.0.dist-info/WHEEL,sha256=aeYiig01lYGDzBgS8HxWXOg3uV61G9ijOsup-k9o1sk,91
pen_stack-3.1.0.dist-info/entry_points.txt,sha256=5FKPTemiVvUgmeecTWOrvwO-fiuHDpJ9y0ITK5BIO4E,88
pen_stack-3.1.0.dist-info/top_level.txt,sha256=0jV2NCFBddUK9spN6ubdoD8w27XBdWg3sMZb-HM648Y,10
pen_stack-3.1.0.dist-info/RECORD,,
