annotate#

The number of bins in each dimension i.e. x_bins = 500, y_bins = 500 will create a 500x500 pixel image - where the bin size in metric space will vary depending on the input data

x_bins: 500
y_bins: 500
z_bins: None

Dimensions of the data either 2 or 3

dim: 2

When saving annotations - you can choose to NOT save the localisations associated with the background which are assigned a label of zero

drop_zero_label: False

Mapping from integers to real concepts

gt_label_map:
  0 : 'background'
  1 : 'membrane'