cellpose_train#

Threshold/interpolation to apply to image For interpolation options are: log2, log10 or linear

img_interpolate: log2
img_threshold: 0

Cellpose model we are training

model: LC1

Learning rate/weight decay/epochs for training

learning_rate: 0.01
weight_decay: 0.0001
epochs: 1000

Whether to use GPU for training

use_gpu: True

The following is not generic, if you need to use this please raise an issue and tag @oubino

For two channel image, we visualise both channels then sum them together Need the name of the first and second channel in terms of the real concepts In this case in the form of a list

channels: ["egfr", "ereg"]

Whether to sum the two channels

sum_chan: True