cellpose_train#
Threshold/interpolation to apply to image For interpolation options are: log2, log10 or linear
img_interpolate: log2
img_threshold: 0
Cellpose model we are training
model: LC1
Learning rate/weight decay/epochs for training
learning_rate: 0.01
weight_decay: 0.0001
epochs: 1000
Whether to use GPU for training
use_gpu: True
The following is not generic, if you need to use this please raise an issue and tag @oubino
For two channel image, we visualise both channels then sum them together Need the name of the first and second channel in terms of the real concepts In this case in the form of a list
channels: ["egfr", "ereg"]
Whether to sum the two channels
sum_chan: True