preprocess#

Name of the column which has the x, y, z (if present) coordinates, the channel and frame information in the csvs being processed [If not present put null]

x_col: 'X (nm)'
y_col: 'Y (nm)'
z_col: null
channel_col: 'Channel'
frame_col: 'Frame'

The number of dimensions to consider If 2 only deals with x and y If 3 will read in and deal with z as well (currently not fully supported)

dim: 2

Choice of which channels user wants to consider

channel_choice: [0,1,2,3]

Label for what each channel represents in real terms where unk is unknown

channel_label: ['egfr','ereg','unk','unk']

Files to include - if want all files

include_files: all

Otherwise list the files without extensions (e.g. .csv) include_files: - file_1 - file_2