MANIFEST.in
README.md
setup.py
sccore/__init__.py
sccore/matrix.py
sccore/parse_chemistry.py
sccore/starsolo.py
sccore/utils.py
sccore.egg-info/PKG-INFO
sccore.egg-info/SOURCES.txt
sccore.egg-info/dependency_links.txt
sccore.egg-info/entry_points.txt
sccore.egg-info/requires.txt
sccore.egg-info/top_level.txt
sccore/chemistry/__init__.py
sccore/chemistry/chemistry_dict.py
sccore/chemistry/AccuraSCOPE_DNA/bc.txt
sccore/chemistry/AccuraSCOPE_RNA_3p/bc.txt
sccore/chemistry/AccuraSCOPE_RNA_5p/bc.txt
sccore/chemistry/GEXSCOPE-V1/bc.txt
sccore/chemistry/GEXSCOPE-V1/linker1.txt
sccore/chemistry/GEXSCOPE-V1/linker2.txt
sccore/chemistry/GEXSCOPE-V2/bc1.txt
sccore/chemistry/GEXSCOPE-V2/bc2.txt
sccore/chemistry/GEXSCOPE-V2/bc3.txt
sccore/chemistry/GEXSCOPE-V2/linker1.txt
sccore/chemistry/GEXSCOPE-V2/linker2.txt
sccore/chemistry/GEXSCOPE-V3/bc1.txt
sccore/chemistry/GEXSCOPE-V3/bc2.txt
sccore/chemistry/GEXSCOPE-V3/bc3.txt
sccore/chemistry/GEXSCOPE-V3/linker1.txt
sccore/chemistry/GEXSCOPE-V3/linker2.txt
sccore/chemistry/bulk_rna-V1/bc.txt
sccore/chemistry/bulk_rna-V2/bc.txt
sccore/chemistry/bulk_rna-V3/bc.txt
sccore/chemistry/bulk_rna-bulk_vdj_match/bc.txt
sccore/chemistry/bulk_vdj/bc.txt
sccore/chemistry/bulk_vdj/linker.txt
sccore/chemistry/flv/bc.txt
sccore/chemistry/flv/linker1.txt
sccore/chemistry/flv/linker2.txt
sccore/chemistry/flv-V2/bc1.txt
sccore/chemistry/flv-V2/bc2.txt
sccore/chemistry/flv-V2/bc3.txt
sccore/chemistry/flv-V2/linker1.txt
sccore/chemistry/flv-V2/linker2.txt
sccore/chemistry/flv-V2/linker3.txt
sccore/chemistry/flv_rna/bc.txt
sccore/chemistry/flv_rna/linker1.txt
sccore/chemistry/flv_rna/linker2.txt
sccore/chemistry/flv_rna-V2/bc1.txt
sccore/chemistry/flv_rna-V2/bc2.txt
sccore/chemistry/flv_rna-V2/bc3.txt
sccore/chemistry/flv_rna-V2/linker1.txt
sccore/chemistry/flv_rna-V2/linker2.txt
sccore/chemistry/flv_rna-V2/linker3.txt
sccore/cli/__init__.py
sccore/cli/add_exogenous_genes.py
sccore/cli/bam2fastq.py
sccore/cli/celespace.py
sccore/cli/citeseq_otsu.py
sccore/cli/cloud_convert.py
sccore/cli/create_genome.py
sccore/cli/create_test.py
sccore/cli/create_test_data.py
sccore/cli/delete_files.py
sccore/cli/filter_gtf.py
sccore/cli/format_bc.py
sccore/cli/gene_reads.py
sccore/cli/human_mouse.py
sccore/cli/intersection.py
sccore/cli/intersection_fq.py
sccore/cli/invalid.py
sccore/cli/manifest.py
sccore/cli/pathseq_report.py
sccore/cli/rc.py
sccore/cli/split_accura.py
sccore/cli/split_bam.py
sccore/cli/split_chemistry.py
sccore/cli/starsolo_feature.py
sccore/cli/sub-matrix.py
sccore/cli/tag-otsu.py
sccore/cli/tag_in_silico.py
sccore/cli/v1_bam2fastq.py