torch>=2.0
transformers>=4.30
pandas>=2.0
numpy>=1.24
scikit-learn>=1.3
scipy>=1.11
anndata>=0.10
biom-format>=2.1
requests>=2.31
pyyaml>=6.0
tqdm>=4.65

[all]
gaia-soil[dev,tracking,viz]

[dev]
pytest>=7.4
pytest-cov>=4.1
black>=23.7
isort>=5.12
flake8>=6.1
mypy>=1.5

[tracking]
wandb>=0.15

[viz]
matplotlib>=3.7
seaborn>=0.12
umap-learn>=0.5
