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AGENTS.md
CONTEXT.md
ENVIRONMENT.yml
LICENSE.txt
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bingo/__init__.py
bingo/.idea/bingo.iml
bingo/.idea/misc.xml
bingo/.idea/modules.xml
bingo/chromosomes/__init__.py
bingo/chromosomes/chromosome.py
bingo/chromosomes/crossover.py
bingo/chromosomes/generator.py
bingo/chromosomes/multiple_floats.py
bingo/chromosomes/multiple_values.py
bingo/chromosomes/mutation.py
bingo/evaluation/__init__.py
bingo/evaluation/evaluation.py
bingo/evaluation/fitness_function.py
bingo/evaluation/random_subset_evaluation.py
bingo/evaluation/training_data.py
bingo/evolutionary_algorithms/__init__.py
bingo/evolutionary_algorithms/age_fitness.py
bingo/evolutionary_algorithms/ea_diagnostics.py
bingo/evolutionary_algorithms/evolutionary_algorithm.py
bingo/evolutionary_algorithms/generalized_crowding.py
bingo/evolutionary_algorithms/mu_comma_lambda.py
bingo/evolutionary_algorithms/mu_plus_lambda.py
bingo/evolutionary_optimizers/__init__.py
bingo/evolutionary_optimizers/archipelago.py
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bingo/evolutionary_optimizers/evolutionary_optimizer.py
bingo/evolutionary_optimizers/fitness_predictor.py
bingo/evolutionary_optimizers/fitness_predictor_island.py
bingo/evolutionary_optimizers/island.py
bingo/evolutionary_optimizers/parallel_archipelago.py
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bingo/expressions/__init__.py
bingo/expressions/agraph/__init__.py
bingo/expressions/agraph/component_generator.py
bingo/expressions/agraph/crossover.py
bingo/expressions/agraph/evolvable.py
bingo/expressions/agraph/generator.py
bingo/expressions/agraph/mutation.py
bingo/expressions/agraph/probability_mass_function.py
bingo/expressions/agraph/utils.py
bingo/expressions/agraph/cppagraph/.gitignore
bingo/expressions/agraph/cppagraph/CMakeLists.txt
bingo/expressions/agraph/cppagraph/__init__.py
bingo/expressions/agraph/cppagraph/bindings/bind_cas_simplify.cpp
bingo/expressions/agraph/cppagraph/bindings/bind_data_container.cpp
bingo/expressions/agraph/cppagraph/bindings/bind_evaluation.cpp
bingo/expressions/agraph/cppagraph/bindings/bind_expression.cpp
bingo/expressions/agraph/cppagraph/bindings/bind_operators.cpp
bingo/expressions/agraph/cppagraph/bindings/bind_simplification.cpp
bingo/expressions/agraph/cppagraph/bindings/module.cpp
bingo/expressions/agraph/cppagraph/include/cppagraph/automatic_simplification.h
bingo/expressions/agraph/cppagraph/include/cppagraph/cached_evaluation.h
bingo/expressions/agraph/cppagraph/include/cppagraph/cas_expression.h
bingo/expressions/agraph/cppagraph/include/cppagraph/cas_simplify.h
bingo/expressions/agraph/cppagraph/include/cppagraph/constant_folding.h
bingo/expressions/agraph/cppagraph/include/cppagraph/data_container.h
bingo/expressions/agraph/cppagraph/include/cppagraph/evaluation.h
bingo/expressions/agraph/cppagraph/include/cppagraph/expression.h
bingo/expressions/agraph/cppagraph/include/cppagraph/interpreter.h
bingo/expressions/agraph/cppagraph/include/cppagraph/operator_eval.h
bingo/expressions/agraph/cppagraph/include/cppagraph/operators.h
bingo/expressions/agraph/cppagraph/include/cppagraph/optional_modifications.h
bingo/expressions/agraph/cppagraph/include/cppagraph/simplification.h
bingo/expressions/agraph/cppagraph/src/automatic_simplification.cpp
bingo/expressions/agraph/cppagraph/src/cached_evaluation.cpp
bingo/expressions/agraph/cppagraph/src/cas_expression.cpp
bingo/expressions/agraph/cppagraph/src/cas_simplify.cpp
bingo/expressions/agraph/cppagraph/src/constant_folding.cpp
bingo/expressions/agraph/cppagraph/src/data_container.cpp
bingo/expressions/agraph/cppagraph/src/evaluation.cpp
bingo/expressions/agraph/cppagraph/src/expression.cpp
bingo/expressions/agraph/cppagraph/src/interpreter.cpp
bingo/expressions/agraph/cppagraph/src/operator_eval.cpp
bingo/expressions/agraph/cppagraph/src/operators.cpp
bingo/expressions/agraph/cppagraph/src/optional_modifications.cpp
bingo/expressions/agraph/cppagraph/src/simplification.cpp
bingo/expressions/agraph/cppagraph/tests/test_cas_simplify.cpp
bingo/expressions/agraph/cppagraph/tests/test_data_container.cpp
bingo/expressions/agraph/cppagraph/tests/test_evaluation.cpp
bingo/expressions/agraph/cppagraph/tests/test_expression.cpp
bingo/expressions/agraph/cppagraph/tests/test_operators.cpp
bingo/expressions/agraph/cppagraph/tests/test_simplification.cpp
bingo/expressions/agraph/pyagraph/__init__.py
bingo/expressions/agraph/pyagraph/data_container.py
bingo/expressions/agraph/pyagraph/expression.py
bingo/expressions/agraph/pyagraph/formatting.py
bingo/expressions/agraph/pyagraph/onnx_interface.py
bingo/expressions/agraph/pyagraph/operators.py
bingo/expressions/agraph/pyagraph/parsing.py
bingo/expressions/agraph/pyagraph/evaluation/__init__.py
bingo/expressions/agraph/pyagraph/evaluation/cached_evaluation.py
bingo/expressions/agraph/pyagraph/evaluation/evaluation.py
bingo/expressions/agraph/pyagraph/evaluation/operator_eval.py
bingo/expressions/agraph/pyagraph/simplification/__init__.py
bingo/expressions/agraph/pyagraph/simplification/_reduce.py
bingo/expressions/agraph/pyagraph/simplification/_simplify.py
bingo/expressions/agraph/pyagraph/simplification/automatic_simplification.py
bingo/expressions/agraph/pyagraph/simplification/cas_expression.py
bingo/expressions/agraph/pyagraph/simplification/constant_folding.py
bingo/expressions/agraph/pyagraph/simplification/interpreter.py
bingo/expressions/agraph/pyagraph/simplification/optional_modifications.py
bingo/selection/__init__.py
bingo/selection/age_fitness.py
bingo/selection/deterministic_crowding.py
bingo/selection/generalized_crowding.py
bingo/selection/probabilistic_crowding.py
bingo/selection/probabilistic_tournament.py
bingo/selection/selection.py
bingo/selection/tournament.py
bingo/stats/__init__.py
bingo/stats/hall_of_fame.py
bingo/stats/pareto_front.py
bingo/symbolic_regression/__init__.py
bingo/symbolic_regression/_expression_regression_objective.py
bingo/symbolic_regression/custom_regression.py
bingo/symbolic_regression/evidence.py
bingo/symbolic_regression/explicit_regression.py
bingo/symbolic_regression/fitting.py
bingo/symbolic_regression/implicit_regression.py
bingo/symbolic_regression/objective_data.py
bingo/symbolic_regression/symbolic_regressor.py
bingo/util/__init__.py
bingo/util/argument_validation.py
bingo/util/log.py
bingo/util/probability_mass_function.py
bingo/variation/__init__.py
bingo/variation/add_random_individuals.py
bingo/variation/var_and.py
bingo/variation/var_or.py
bingo/variation/variation.py
bingo_nasa.egg-info/PKG-INFO
bingo_nasa.egg-info/SOURCES.txt
bingo_nasa.egg-info/dependency_links.txt
bingo_nasa.egg-info/not-zip-safe
bingo_nasa.egg-info/requires.txt
bingo_nasa.egg-info/scm_file_list.json
bingo_nasa.egg-info/scm_version.json
bingo_nasa.egg-info/top_level.txt
docs/Makefile
docs/make.bat
docs/adr/0001-tiered-ci-architecture.md
docs/adr/0002-expression-specific-fitting.md
docs/adr/0003-optional-mpi-dependency.md
docs/agents/domain.md
docs/agents/issue-tracker.md
docs/agents/testpypi-public-prereleases.md
docs/agents/triage-labels.md
docs/issues/expression-fitting-and-evidence/WORK-BRIEF.md
docs/issues/expression-fitting-and-evidence/issues/01-expression-fitting-foundations.md
docs/issues/expression-fitting-and-evidence/issues/02-custom-regression-fitting.md
docs/issues/expression-fitting-and-evidence/issues/03-smc-evidence-estimation.md
docs/issues/expression-fitting-and-evidence/issues/04-retire-generic-local-optimization.md
docs/source/conf.py
docs/source/get_started.nblink
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docs/source/index.rst
docs/source/installation.rst
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docs/source/migration.rst
docs/source/_high_level/data_formatting.rst
docs/source/_high_level/expressions.rst
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examples/.test_examples.sh
examples/AgraphExample.py
examples/OneMaxExample.py
examples/SRParallelArchipelagoExample.py
examples/SRSerialArchipelagoExample.py
examples/Tutorial_1_One_Max.ipynb
examples/Tutorial_2_Zero_Min.ipynb
examples/Tutorial_3_Archipelagos_and_Logging.ipynb
examples/Tutorial_4_Symbolic_Regression.ipynb
examples/ZeroMinExample.py
examples/get_started.ipynb
examples/sklearn_wrapper.ipynb
media/logo.png
media/usage_example_1.png
media/usage_example_2.png
tests/.run_tests.sh
tests/integration/test_fitness_predictor_eval.py
tests/integration/test_fitness_predictor_island_evo.py
tests/integration/test_island_evo.py
tests/integration/test_parallel_archipelago_evo.py
tests/integration/test_serial_archipelago_evo.py
tests/integration/test_serial_install.py
tests/integration/mpitests/mpitest_parallel_archipelago.py
tests/integration/mpitests/mpitest_parallel_archipelago_and_multiprocessing.py
tests/integration/mpitests/mpitest_util.py
tests/performance_benchmarking/evaluation_benchmark.py
tests/performance_benchmarking/evolution_benchmark.py
tests/performance_benchmarking/performance_benchmarks.py
tests/unit/test_setup.py
tests/unit/chromosomes/test_chromosome.py
tests/unit/chromosomes/test_crossover_mutation_generation.py
tests/unit/chromosomes/test_multiple_float_chromosome.py
tests/unit/chromosomes/test_multiple_value_chromosome.py
tests/unit/evaluation/test_base_evaluation.py
tests/unit/evaluation/test_fitness_function.py
tests/unit/evaluation/test_random_subset_evaluation.py
tests/unit/evaluation/test_training_data.py
tests/unit/evolutionary_algorithms/test_age_fitness_ea.py
tests/unit/evolutionary_algorithms/test_ea_diagnostics.py
tests/unit/evolutionary_algorithms/test_evolutionary_algorithm.py
tests/unit/evolutionary_algorithms/test_generalized_crowding_ea.py
tests/unit/evolutionary_algorithms/test_mu_comma_lambda.py
tests/unit/evolutionary_algorithms/test_mu_plus_lambda.py
tests/unit/evolutionary_optimizers/test_evolutionary_optimizer.py
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tests/unit/expressions/agraph/__init__.py
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tests/unit/expressions/agraph/test_crossover.py
tests/unit/expressions/agraph/test_fit_lifecycle.py
tests/unit/expressions/agraph/test_generator.py
tests/unit/expressions/agraph/test_mutation.py
tests/unit/expressions/agraph/test_probability_mass_function.py
tests/unit/expressions/agraph/test_utils.py
tests/unit/expressions/agraph/cppagraph/__init__.py
tests/unit/expressions/agraph/cppagraph/test_cross_implementation.py
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