mlx>=0.30.0
click>=8.1.0
scipy>=1.9.0
ml_collections==1.1.0
tqdm>=4.66
pandas>=2.2
rdkit==2025.9.3
biopython==1.85
biotite==1.4.0
scikit-learn>=1.5
pydantic>=2.0.0
numpy>=2.0
networkx>=3.4.2
packaging>=23.2
requests>=2.31.0

[convert]
torch>=2.4
