Metadata-Version: 2.2
Name: fastq_file_utils
Version: 0.1.0
Summary: A collection of Python scripts for working with FASTQ files.
Author-email: Jaideep Sundaram <jai.python3@gmail.com>
Maintainer-email: Jaideep Sundaram <jai.python3@gmail.com>
License: Not open source
Project-URL: Homepage, https://github.com/jai-python3/fastq-file-utils
Keywords: fastq_file_utils
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Developers
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 3.10
Requires-Python: >=3.10
Description-Content-Type: text/x-rst
License-File: AUTHORS.rst
Requires-Dist: Click>=7.0
Requires-Dist: PyYAML
Requires-Dist: Rich
Requires-Dist: singleton-decorator
Provides-Extra: dev
Requires-Dist: coverage; extra == "dev"
Requires-Dist: mypy; extra == "dev"
Requires-Dist: pytest; extra == "dev"
Requires-Dist: ruff; extra == "dev"

================
FASTQ File Utils
================

A collection of Python scripts for working with FASTQ files.

Exported console scripts
------------------------

* validate-fastq-file
* analyze-fastq-file

.. code-block:: bash

    validate-fastq-file --infile ~/projects/fastq-file-utils/examples/sample_001_R1.fastq
    --outdir was not specified and therefore was set to '/tmp/sundaram/fastq-file-utils/validate_fastq_file/2025-02-26-101734'
    Created output directory '/tmp/sundaram/fastq-file-utils/validate_fastq_file/2025-02-26-101734'
    --logfile was not specified and therefore was set to 
    '/tmp/sundaram/fastq-file-utils/validate_fastq_file/2025-02-26-101734/validate_fastq_file.log'
    Valid FASTQ file with 3 records.
    Detected Phred Encoding: Phred+33
    Total Records: 3
