Metadata-Version: 2.2
Name: fugassem
Version: 0.3.7
Summary: FUGAsseM: Function predictor of Uncharacterized Gene products by Assessing high-dimensional community data in microbiome
Home-page: https://github.com/biobakery/fugassem
Author: FUGAsseM Development Team
Author-email: zhangyc201211@gmail.com
License: MIT
Keywords: microbial,microbiome,bioinformatics,microbiology,metagenomic,metatranscriptomic,function prediction,unknown proteins,microbial dark matter,fugassem,anadama2
Platform: Linux
Platform: MacOS
Classifier: Programming Language :: Python
Classifier: Development Status :: 5 - Production/Stable
Classifier: Environment :: Console
Classifier: Operating System :: MacOS
Classifier: Operating System :: Unix
Classifier: Programming Language :: Python :: 3.7
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
License-File: LICENSE
Dynamic: author
Dynamic: author-email
Dynamic: classifier
Dynamic: description
Dynamic: home-page
Dynamic: keywords
Dynamic: license
Dynamic: platform
Dynamic: summary

FUGAsseM is a computational tool based on a “guild by association” approach to predict functions of novel gene products in the context of microbial communities. It uses machine learning methods to predict functions of microbial proteins by integrating multiple types of community-based data, including co-expression patterns from metatranscriptomics, co-localization patterns from metagenomic assemblies, homologous-based annotation, domain-based annotations, etc.
