CHANGELOG.md
CITATION.cff
CODE_OF_CONDUCT.md
CONTRIBUTING.md
LICENSE
MANIFEST.in
README.md
SECURITY.md
pyproject.toml
docs/architecture.md
docs/community.md
docs/ecosystem.md
docs/evaluation.md
docs/frontier-hypotheses.md
docs/mechanistic-biology-profile.md
docs/pilot.md
docs/product.md
docs/releasing.md
docs/roadmap.md
docs/rules.md
docs/specification.md
docs/table-import.md
examples/minimal-project.yaml
examples/results/expression.csv
examples/results/motifs.tsv
spec/paperci.schema.json
src/paperci/__init__.py
src/paperci/__main__.py
src/paperci/_version.py
src/paperci/cli.py
src/paperci/comparison.py
src/paperci/demo.py
src/paperci/engine.py
src/paperci/errors.py
src/paperci/findings.py
src/paperci/hypotheses.py
src/paperci/hypothesis_comparison.py
src/paperci/profiles.py
src/paperci/project.py
src/paperci/proposals.py
src/paperci/providers.py
src/paperci/render.py
src/paperci/rule_explanations.py
src/paperci/table_import.py
src/paperci.egg-info/PKG-INFO
src/paperci.egg-info/SOURCES.txt
src/paperci.egg-info/dependency_links.txt
src/paperci.egg-info/entry_points.txt
src/paperci.egg-info/requires.txt
src/paperci.egg-info/top_level.txt
tests/test_cli.py
tests/test_nature_benchmark_regressions.py
tests/test_schema_and_engine.py
tests/fixtures/contradictory-multiomics.yaml
tests/fixtures/intervention-without-rescue.yaml
tests/fixtures/nested-experiment.yaml