LICENSE
LICENSE_dependencies
README.md
setup.py
bin/ilund4u
ilund4u/__init__.py
ilund4u/data_manager.py
ilund4u/data_processing.py
ilund4u/drawing.py
ilund4u/manager.py
ilund4u/methods.py
ilund4u.egg-info/PKG-INFO
ilund4u.egg-info/SOURCES.txt
ilund4u.egg-info/dependency_links.txt
ilund4u.egg-info/not-zip-safe
ilund4u.egg-info/requires.txt
ilund4u.egg-info/top_level.txt
ilund4u/../docs/pypi.md
ilund4u/ilund4u_data/.DS_Store
ilund4u/ilund4u_data/category_colours_proteome_groups.tsv
ilund4u/ilund4u_data/help_hotspots.txt
ilund4u/ilund4u_data/help_main.txt
ilund4u/ilund4u_data/help_protein.txt
ilund4u/ilund4u_data/help_proteome.txt
ilund4u/ilund4u_data/standard.cfg
ilund4u/ilund4u_data/bin/.DS_Store
ilund4u/ilund4u_data/bin/mmseqs_linux.zip
ilund4u/ilund4u_data/bin/mmseqs_mac/.DS_Store
ilund4u/ilund4u_data/bin/mmseqs_mac/LICENSE.md
ilund4u/ilund4u_data/bin/mmseqs_mac/README.md
ilund4u/ilund4u_data/bin/mmseqs_mac/userguide.pdf
ilund4u/ilund4u_data/bin/mmseqs_mac/bin/mmseqs
ilund4u/ilund4u_data/bin/mmseqs_mac/examples/DB.fasta
ilund4u/ilund4u_data/bin/mmseqs_mac/examples/QUERY.fasta
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/PAM10.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/PAM100.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/PAM110.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/PAM120.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/PAM130.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/PAM140.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/PAM150.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/PAM160.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/PAM170.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/PAM180.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/PAM190.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/PAM20.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/PAM30.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/PAM40.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/PAM50.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/PAM60.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/PAM70.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/PAM80.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/PAM90.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/VTML10.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/VTML120.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/VTML160.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/VTML20.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/VTML40.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/VTML80.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/blosum100.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/blosum30.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/blosum35.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/blosum40.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/blosum45.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/blosum50.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/blosum55.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/blosum60.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/blosum62.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/blosum65.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/blosum70.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/blosum75.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/blosum80.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/blosum85.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/blosum90.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/blosum95.out
ilund4u/ilund4u_data/bin/mmseqs_mac/matrices/nucleotide.out
ilund4u/ilund4u_data/bin/mmseqs_mac/util/bash-completion.sh
ilund4u/ilund4u_data/guide/.DS_Store
ilund4u/ilund4u_data/guide/NC_001895.1.gff
ilund4u/ilund4u_data/guide/RloC.fa
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/.DS_Store
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/all_proteins.fa
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/cds.ind.attributes.json
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/db_info.txt
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/hotspot.ind.attributes.json
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/hotspot.ind.island.annotations.tsv
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/hotspots.annotations.tsv
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/hotspots.attributes.json
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/island.ind.attributes.json
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/parameters.json
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/protein_group_accumulated_statistics.tsv
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/proteome.ind.attributes.json
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/proteomes.annotations.tsv
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/proteomes.attributes.json
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/proteomes.communities_annot.tsv
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/representative_seqs.fa
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/MGV-GENOME-0168725.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/MGV-GENOME-0171006.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/MGV-GENOME-0205381.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/MGV-GENOME-0216186.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/MGV-GENOME-0227212.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/MGV-GENOME-0230157.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/MGV-GENOME-0230591.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/MGV-GENOME-0232811.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/MGV-GENOME-4406672.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/NC_004745.1.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/NC_005056.1.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/NC_022750.1.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/NC_049457.1.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/NC_049461.1.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/NC_055844.1.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/NC_055846.1.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/SAMN09781779_a1_ct39878.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_15215.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_20023.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_20685.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_23865.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_23866.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_23882.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_28372.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_28392.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_28453.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_33725.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_33805.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_33807.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_33809.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_33833.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_37825.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_37844.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_37904.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_37906.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_37938.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_38170.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_38190.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_38191.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_38311.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_51656.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_51929.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_51932.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_51953.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_51960.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_52018.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_52091.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_52112.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_52155.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_52209.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_52222.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_52262.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_52275.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_52349.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_52379.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_52382.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_62779.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_62821.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_62933.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_62953.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_62958.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_62972.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_62992.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_63038.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_63057.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_63096.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_63155.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_9963.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/TemPhD_cluster_9973.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/gff/uvig_315197.gff
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/mmseqs_db/all_proteins
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/mmseqs_db/all_proteins.dbtype
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/mmseqs_db/all_proteins.index
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/mmseqs_db/all_proteins.lookup
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/mmseqs_db/all_proteins.source
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/mmseqs_db/all_proteins_h
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/mmseqs_db/all_proteins_h.dbtype
ilund4u/ilund4u_data/guide/P2-like_phages_guide_DB/mmseqs_db/all_proteins_h.index
ilund4u/ilund4u_data/guide/gff_files/.DS_Store
ilund4u/ilund4u_data/guide/gff_files/MGV-GENOME-0168725.gff
ilund4u/ilund4u_data/guide/gff_files/MGV-GENOME-0171006.gff
ilund4u/ilund4u_data/guide/gff_files/MGV-GENOME-0205381.gff
ilund4u/ilund4u_data/guide/gff_files/MGV-GENOME-0216186.gff
ilund4u/ilund4u_data/guide/gff_files/MGV-GENOME-0227212.gff
ilund4u/ilund4u_data/guide/gff_files/MGV-GENOME-0230157.gff
ilund4u/ilund4u_data/guide/gff_files/MGV-GENOME-0230591.gff
ilund4u/ilund4u_data/guide/gff_files/MGV-GENOME-0232811.gff
ilund4u/ilund4u_data/guide/gff_files/MGV-GENOME-4406672.gff
ilund4u/ilund4u_data/guide/gff_files/NC_004745.1.gff
ilund4u/ilund4u_data/guide/gff_files/NC_005056.1.gff
ilund4u/ilund4u_data/guide/gff_files/NC_022750.1.gff
ilund4u/ilund4u_data/guide/gff_files/NC_049457.1.gff
ilund4u/ilund4u_data/guide/gff_files/NC_049461.1.gff
ilund4u/ilund4u_data/guide/gff_files/NC_055844.1.gff
ilund4u/ilund4u_data/guide/gff_files/NC_055846.1.gff
ilund4u/ilund4u_data/guide/gff_files/SAMN09781779_a1_ct39878.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_15215.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_20023.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_20685.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_23865.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_23866.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_23882.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_28372.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_28392.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_28453.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_33725.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_33805.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_33807.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_33809.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_33833.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_37825.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_37844.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_37904.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_37906.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_37938.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_38170.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_38190.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_38191.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_38311.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_51656.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_51929.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_51932.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_51953.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_51960.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_52018.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_52091.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_52112.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_52155.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_52209.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_52222.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_52262.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_52275.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_52349.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_52379.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_52382.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_62779.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_62821.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_62933.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_62953.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_62958.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_62972.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_62992.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_63038.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_63057.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_63096.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_63155.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_9963.gff
ilund4u/ilund4u_data/guide/gff_files/TemPhD_cluster_9973.gff
ilund4u/ilund4u_data/guide/gff_files/uvig_315197.gff