Metadata-Version: 2.4
Name: anarcii
Version: 2.0.0
Summary: A language model suite for numbering antigen receptor sequences.
Author-email: Alexander Greenshields Watson <opig@stats.ox.ac.uk>
License-File: LICENCE
Requires-Dist: gemmi
Requires-Dist: msgpack
Requires-Dist: numpy
Requires-Dist: psutil
Requires-Dist: sortedcontainers
Requires-Dist: torch
Description-Content-Type: text/markdown

# ANARCII

For the user guide please read the Wiki page: 

https://github.com/oxpig/ANARCII/wiki



## Citing this work 
All code is based on the following paper: 

*ANARCII: A Generalised Language Model for Antigen Receptor Numbering*

https://www.biorxiv.org/content/10.1101/2025.04.16.648720v1

We have a live webtool:

https://opig.stats.ox.ac.uk/webapps/sabdab-sabpred/sabpred/anarcii/

If you use this code or the webtool in your work, please cite:

```
ANARCII: A Generalised Language Model for Antigen Receptor Numbering
Alexander Greenshields-Watson, Parth Agarwal, Sarah A Robinson, Benjamin Heathcote Williams, Gemma L Gordon, Henriette L Capel, Yushi Li, Fabian C Spoendlin, Fergus Boyles, Charlotte M Deane
bioRxiv 2025.04.16.648720; doi: https://doi.org/10.1101/2025.04.16.648720 
```
