LICENSE
README.md
pyproject.toml
swcstudio/__init__.py
swcstudio/api.py
swcstudio.egg-info/PKG-INFO
swcstudio.egg-info/SOURCES.txt
swcstudio.egg-info/dependency_links.txt
swcstudio.egg-info/entry_points.txt
swcstudio.egg-info/requires.txt
swcstudio.egg-info/top_level.txt
swcstudio/cli/__init__.py
swcstudio/cli/cli.py
swcstudio/cli/history_cli.py
swcstudio/core/__init__.py
swcstudio/core/api.py
swcstudio/core/auto_typing_results.py
swcstudio/core/auto_typing_train.py
swcstudio/core/config.py
swcstudio/core/custom_types.py
swcstudio/core/geometry_editing.py
swcstudio/core/gpu_status.py
swcstudio/core/install_check.py
swcstudio/core/issues.py
swcstudio/core/model_paths.py
swcstudio/core/models.py
swcstudio/core/radii_cleaning.py
swcstudio/core/reporting.py
swcstudio/core/simplification.py
swcstudio/core/subtree_editing.py
swcstudio/core/swc_io.py
swcstudio/core/updater.py
swcstudio/core/validation.py
swcstudio/core/validation_catalog.py
swcstudio/core/validation_engine.py
swcstudio/core/validation_impl.py
swcstudio/core/validation_registry.py
swcstudio/core/validation_results.py
swcstudio/core/visualization.py
swcstudio/core/auto_typing/__init__.py
swcstudio/core/auto_typing/_pickle_compat.py
swcstudio/core/auto_typing/_xgb_classifiers.py
swcstudio/core/auto_typing/branch3_gate.py
swcstudio/core/auto_typing/branch_features.py
swcstudio/core/auto_typing/cell_type_detector.py
swcstudio/core/auto_typing/confidence.py
swcstudio/core/auto_typing/config.py
swcstudio/core/auto_typing/features.py
swcstudio/core/auto_typing/flagging.py
swcstudio/core/auto_typing/gnn_apical_basal.py
swcstudio/core/auto_typing/gnn_branch3_inference.py
swcstudio/core/auto_typing/gnn_branch3_rescue.py
swcstudio/core/auto_typing/gnn_dataset.py
swcstudio/core/auto_typing/gnn_inference.py
swcstudio/core/auto_typing/pipeline.py
swcstudio/core/auto_typing/qc_input.py
swcstudio/core/auto_typing/runner.py
swcstudio/core/auto_typing/stage3_refine.py
swcstudio/core/auto_typing/subtree_features.py
swcstudio/core/auto_typing/swc_normalize.py
swcstudio/core/auto_typing/train_stage1.py
swcstudio/core/auto_typing/train_stage2.py
swcstudio/core/auto_typing/types.py
swcstudio/core/provenance/__init__.py
swcstudio/core/provenance/ai_run.py
swcstudio/core/provenance/archive.py
swcstudio/core/provenance/batch.py
swcstudio/core/provenance/canonical.py
swcstudio/core/provenance/crate.py
swcstudio/core/provenance/derived.py
swcstudio/core/provenance/diff.py
swcstudio/core/provenance/env.py
swcstudio/core/provenance/events.py
swcstudio/core/provenance/header.py
swcstudio/core/provenance/index.py
swcstudio/core/provenance/lockfile.py
swcstudio/core/provenance/migration.py
swcstudio/core/provenance/objects.py
swcstudio/core/provenance/ops.py
swcstudio/core/provenance/refs.py
swcstudio/core/provenance/render.py
swcstudio/core/provenance/tracked_op.py
swcstudio/core/validation_checks/__init__.py
swcstudio/core/validation_checks/native_checks.py
swcstudio/core/validation_checks/neuron_morphology_checks.py
swcstudio/data/models/branch_classifier.pkl
swcstudio/data/models/cell_type_classifier.pkl
swcstudio/data/models/flag_model_all.joblib
swcstudio/data/models/flag_model_interneuron.joblib
swcstudio/data/models/flag_model_pyramidal.joblib
swcstudio/data/models/gnn_apical_basal.pt
swcstudio/data/models/gnn_branch3_rescue.pt
swcstudio/data/models/qc_gate.pkl
swcstudio/gui/__init__.py
swcstudio/gui/auto_label_process.py
swcstudio/gui/auto_typing_guide.py
swcstudio/gui/auto_typing_workers.py
swcstudio/gui/batch_tab.py
swcstudio/gui/constants.py
swcstudio/gui/context_inspector.py
swcstudio/gui/custom_type_dialog.py
swcstudio/gui/dendrogram_widget.py
swcstudio/gui/edit_history.py
swcstudio/gui/editor_tab.py
swcstudio/gui/font_utils.py
swcstudio/gui/geometry_editing_panel.py
swcstudio/gui/graph_utils.py
swcstudio/gui/history_panel.py
swcstudio/gui/issue_panel.py
swcstudio/gui/main.py
swcstudio/gui/main_window.py
swcstudio/gui/manual_radii_panel.py
swcstudio/gui/neuron_3d_widget.py
swcstudio/gui/radii_cleaning_panel.py
swcstudio/gui/report_popup.py
swcstudio/gui/simplification_panel.py
swcstudio/gui/swc_table_widget.py
swcstudio/gui/type_suspicion_process.py
swcstudio/gui/validation_auto_label_panel.py
swcstudio/gui/validation_core.py
swcstudio/gui/validation_tab.py
swcstudio/plugins/__init__.py
swcstudio/plugins/contracts.py
swcstudio/plugins/loader.py
swcstudio/plugins/registry.py
swcstudio/tools/__init__.py
swcstudio/tools/batch_processing/__init__.py
swcstudio/tools/batch_processing/configs/auto_typing.json
swcstudio/tools/batch_processing/configs/batch_validation.json
swcstudio/tools/batch_processing/configs/radii_cleaning.json
swcstudio/tools/batch_processing/configs/split.json
swcstudio/tools/batch_processing/configs/swc_splitter.json
swcstudio/tools/batch_processing/features/__init__.py
swcstudio/tools/batch_processing/features/auto_typing.py
swcstudio/tools/batch_processing/features/batch_validation.py
swcstudio/tools/batch_processing/features/index_clean.py
swcstudio/tools/batch_processing/features/radii_cleaning.py
swcstudio/tools/batch_processing/features/simplification.py
swcstudio/tools/batch_processing/features/split.py
swcstudio/tools/batch_processing/features/swc_splitter.py
swcstudio/tools/batch_processing/features/validation.py
swcstudio/tools/geometry_editing/__init__.py
swcstudio/tools/geometry_editing/features/__init__.py
swcstudio/tools/geometry_editing/features/operations.py
swcstudio/tools/morphology_editing/__init__.py
swcstudio/tools/morphology_editing/configs/dendrogram_editing.json
swcstudio/tools/morphology_editing/configs/simplification.json
swcstudio/tools/morphology_editing/features/__init__.py
swcstudio/tools/morphology_editing/features/dendrogram_editing.py
swcstudio/tools/morphology_editing/features/manual_label.py
swcstudio/tools/morphology_editing/features/manual_radii.py
swcstudio/tools/morphology_editing/features/simplification.py
swcstudio/tools/validation/__init__.py
swcstudio/tools/validation/configs/auto_fix.json
swcstudio/tools/validation/configs/default.json
swcstudio/tools/validation/configs/radii_cleaning.json
swcstudio/tools/validation/configs/run_checks.json
swcstudio/tools/validation/features/__init__.py
swcstudio/tools/validation/features/auto_fix.py
swcstudio/tools/validation/features/auto_typing.py
swcstudio/tools/validation/features/core.py
swcstudio/tools/validation/features/index_clean.py
swcstudio/tools/validation/features/radii_cleaning.py
swcstudio/tools/validation/features/run_checks.py
swcstudio/tools/visualization/__init__.py
swcstudio/tools/visualization/configs/mesh_editing.json
swcstudio/tools/visualization/features/__init__.py
swcstudio/tools/visualization/features/mesh_editing.py
tests/test_auto_typing_qc.py
tests/test_cli_autolabel_history.py
tests/test_cli_smoke.py
tests/test_gui_smoke.py
tests/test_install_check.py
tests/test_packaging_layout.py
tests/test_performance_paths.py
tests/test_provenance_archive.py
tests/test_type_suspicion_process.py