Metadata-Version: 2.4
Name: RNAvigate
Version: 1.1.0
Summary: RNA visualization and graphical analysis toolset
Author-email: Patrick Irving <psirving@gmail.com>
License-Expression: MIT
Project-URL: Homepage, https://github.com/Weeks-UNC/RNAvigate
Project-URL: Documentation, https://rnavigate.readthedocs.io/en/latest/
Project-URL: Bug Tracker, https://github.com/Weeks-UNC/RNAvigate/issues
Keywords: RNA,chemical probing,visualization,bioinformatics,structural biology
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Visualization
Classifier: Intended Audience :: Science/Research
Requires-Python: >=3.9
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: biopython>=1.78
Requires-Dist: ipython>=8.18.1
Requires-Dist: jedi>=0.19.2
Requires-Dist: matplotlib>=3.8
Requires-Dist: numpy>=1.20.1
Requires-Dist: openpyxl>=3.1.2
Requires-Dist: pandas>=1.4.4
Requires-Dist: py3dmol>=2.0.0
Requires-Dist: requests
Requires-Dist: scikit-learn>=1.0.2
Requires-Dist: scipy>=1.6.2
Requires-Dist: seaborn>=0.13.0
Requires-Dist: statsmodels>=0.14.1
Provides-Extra: dev
Requires-Dist: ipykernel>=6.6.0; extra == "dev"
Requires-Dist: jupyter>=1.0.0; extra == "dev"
Requires-Dist: pytest>=7.0; extra == "dev"
Requires-Dist: pytest-cov>=4.0; extra == "dev"
Requires-Dist: ruff>=0.4; extra == "dev"
Provides-Extra: docs
Requires-Dist: sphinx; extra == "docs"
Requires-Dist: sphinx-autobuild; extra == "docs"
Requires-Dist: sphinx-rtd-theme; extra == "docs"
Requires-Dist: nbsphinx; extra == "docs"
Dynamic: license-file

RNAvigate
=========

RNAvigate is a toolset to explore, compare, and visualize chemical probing data,
structure models, and annotations between experimental samples.

**For non-coders**, RNAvigate is designed to be easy to learn. Reach out to me if you
want help onboarding for your group. Using RNAvigate in a Jupyter Notebook will
transform how you explore data, document thoughts, and share transparent and reproducible analyses.

**For coders**, RNAvigate is extremely flexible and a great package for scripting
and standardizing plots and analyses as part of a bigger workflow.

* [**_Click here for the full documentation_**](https://rnavigate.readthedocs.io/en/latest/)

## Reach out

Coders and non-coders, **reach out** if you have any comments or issues at all!
I love to help users and to learn how you are using this tool.

Please, use GitHub Issues **_liberally_** or email me. "Issues" can be:

- a "dumb" question (my favorite kind) or a complicated one.
- *any* comment or suggestion for the documentation or the code.
- a cool thing that you did with RNAvigate.
- a report of a bug or unclear error.
- a request for help on acheiving a desired vizualization or analysis.
- a request for advice on any chemical probing matter.
