jax
jaxlib
apsw
bbknn
cgatcore
drmaa
gevent
harmonypy
mofapy2
muon
matplotlib
openpyxl
paramiko
pysam
pyyaml
ruffus
scanorama
scanpy
seaborn
leidenalg
louvain
scib
scib-metrics
scikit-misc
scirpy
scrublet
scvi-tools
sqlalchemy

[dev]
packaging
pytest
twine
build

[notebook]
jupyter
jupyterlab

[refmap_old]
scvi-tools
pandas<2.0.0
scib

[spatial]
jax
jaxlib
scvi-tools
scipy
squidpy
cell2location
tangram-sc
spatialdata
spatialdata-io
dask
