# Generated by Cargo
# will have compiled files and executables
debug
target

# macOS
.DS_Store
**/.DS_Store

# Python
__pycache__/
**/__pycache__/
*.py[cod]
*.so
*.dylib
*.pyd
.venv/
dist/
*.egg-info/
python/uv.lock
# pytest-benchmark cache (regenerated on each run)
.benchmarks/

# Example outputs (generated at runtime)
examples/**/out/
examples/**/*.xyz
# ...but keep the interface example's official xyz *input* structures
!examples/pack_interface/water.xyz
!examples/pack_interface/chlor.xyz
!examples/pack_interface/t3.xyz
examples/**/bilayer.pdb
examples/**/mixture.pdb
examples/**/spherical.pdb
examples/**/interface.pdb
examples/**/solvprotein.pdb
examples/**/_ci_*.pdb

# These are backup files generated by rustfmt
**/*.rs.bk

# MSVC Windows builds of rustc generate these, which store debugging information
# Scoped to target/ so molecular structure .pdb files in examples/ are tracked.
target/**/*.pdb

# macOS debug symbol bundles (generated by maturin/clang)
*.dSYM/

# Generated by cargo mutants
# Contains mutation testing data
**/mutants.out*/

# Zensical build output
site/

# Claude Code session state
.claude/scheduled_tasks.lock

# RustRover
#  JetBrains specific template is maintained in a separate JetBrains.gitignore that can
#  be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
#  and can be added to the global gitignore or merged into this file.  For a more nuclear
#  option (not recommended) you can uncomment the following to ignore the entire idea folder.
#.idea/

# Local Claude worktrees (transient)
.claude/worktrees/
Cargo.lock
