LICENSE
MANIFEST.in
README.md
example.config.json
fridata.py
pyproject.toml
FRIdata.egg-info/PKG-INFO
FRIdata.egg-info/SOURCES.txt
FRIdata.egg-info/dependency_links.txt
FRIdata.egg-info/entry_points.txt
FRIdata.egg-info/requires.txt
FRIdata.egg-info/top_level.txt
scripts/install_pytorch.sh
scripts/setup_env.sh
scripts/hpc/common_slurm.sh
scripts/hpc/initialize_slurm.sh
scripts/hpc/launch_workers_slurm.sh
scripts/hpc/run_slurm.sh
toolbox/__init__.py
toolbox/config.py
toolbox/initialize_repository.py
toolbox/worker_setup.py
toolbox/models/distogram.py
toolbox/models/distogramType.py
toolbox/models/protein.py
toolbox/models/proteinType.py
toolbox/models/chains/verify_chains.py
toolbox/models/embedding/embedding.py
toolbox/models/embedding/utils.py
toolbox/models/embedding/embedder/base_embedder.py
toolbox/models/embedding/embedder/embedder_type.py
toolbox/models/embedding/embedder/esm2_embedder.py
toolbox/models/embedding/embedder/esmc_embedder.py
toolbox/models/embedding/embedder/glm2_embedder.py
toolbox/models/manage_dataset/collection_type.py
toolbox/models/manage_dataset/compute_batches.py
toolbox/models/manage_dataset/create_archive.py
toolbox/models/manage_dataset/csv_processor.py
toolbox/models/manage_dataset/database_type.py
toolbox/models/manage_dataset/extract_archive.py
toolbox/models/manage_dataset/structures_dataset.py
toolbox/models/manage_dataset/utils.py
toolbox/models/manage_dataset/distograms/example_pdb.py
toolbox/models/manage_dataset/distograms/generate_distograms.py
toolbox/models/manage_dataset/index/handle_index.py
toolbox/models/manage_dataset/index/handle_indexes.py
toolbox/models/manage_dataset/sequences/sequence_and_coordinates_retriever.py
toolbox/models/utils/cif2pdb.py
toolbox/models/utils/create_client.py
toolbox/models/utils/from_archive.py
toolbox/scripts/archive.py
toolbox/scripts/command_parser.py
toolbox/scripts/list_datasets.py
toolbox/scripts/sequences/compare_fastas.py
toolbox/utlis/colored_logging.py
toolbox/utlis/filter_pdb_codes.py
toolbox/utlis/inspect_h5.py
toolbox/utlis/inspect_idx.py
toolbox/utlis/logging.py
toolbox/utlis/remove_dataset.py
toolbox/utlis/search_indexes.py
toolbox/viewer/export_index_html.py