foldcomp
pydantic>=2.8.2
scipy>=1.14.0
h5py
matplotlib
biotite>=0.41.2
numpy<1.27.0,>=1.26.4
genson
beautifulsoup4
biopython
dask<2025.0.0,>=2024.4.2
dask[dataframe]
distributed<2025.0.0,>=2024.4.2
python-dotenv
tables
bokeh<3.0.0,>=2.4.2
tqdm

[dev]
FRIdata[embeddings,test]
build
twine

[embeddings]
torch
esm
transformers

[test]
pytest
pytest-order
