LICENSE
README.md
setup.py
ilus/__init__.py
ilus/main.py
ilus.egg-info/PKG-INFO
ilus.egg-info/SOURCES.txt
ilus.egg-info/dependency_links.txt
ilus.egg-info/entry_points.txt
ilus.egg-info/requires.txt
ilus.egg-info/top_level.txt
ilus/launch/__init__.py
ilus/launch/do.py
ilus/launch/runfunction.py
ilus/modules/__init__.py
ilus/modules/bcftools.py
ilus/modules/bwa.py
ilus/modules/gatk.py
ilus/modules/sentieon.py
ilus/modules/soapnuke.py
ilus/modules/summary/__init__.py
ilus/modules/summary/bam.py
ilus/modules/utils/__init__.py
ilus/modules/utils/_check_config.py
ilus/modules/utils/_check_input.py
ilus/modules/utils/_check_jobs.py
ilus/modules/utils/_split_jobs.py
ilus/modules/utils/_utils.py
ilus/pipeline/__init__.py
ilus/pipeline/_command_args.py
ilus/pipeline/_germline_short_variant_discovery.py
tests/test_yaml.py