Metadata-Version: 2.4
Name: mne-bids-pipeline
Version: 1.10.1
Summary: A full-flegded processing pipeline for your MEG and EEG data
Project-URL: changelog, http://mne.tools/mne-bids-pipeline/changes.html
Project-URL: homepage, https://mne.tools/mne-bids-pipeline
Project-URL: repository, https://github.com/mne-tools/mne-bids-pipeline
Author: Eric Larson, Alexandre Gramfort, Mainak Jas
Author-email: Richard Höchenberger <richard.hoechenberger@gmail.com>
License-Expression: BSD-3-Clause
License-File: LICENSE.txt
Keywords: neuroscience,psychology,science
Classifier: Intended Audience :: Science/Research
Classifier: Programming Language :: Python
Requires-Python: >=3.10
Requires-Dist: annotated-types
Requires-Dist: autoreject
Requires-Dist: bokeh
Requires-Dist: dask[distributed]
Requires-Dist: filelock
Requires-Dist: h5io
Requires-Dist: joblib>=0.14
Requires-Dist: json-tricks
Requires-Dist: jupyter-server-proxy
Requires-Dist: matplotlib
Requires-Dist: meegkit
Requires-Dist: mne-bids[full]>=0.12
Requires-Dist: mne-icalabel
Requires-Dist: mne[hdf5]>=1.7
Requires-Dist: nibabel
Requires-Dist: numpy
Requires-Dist: openpyxl
Requires-Dist: packaging
Requires-Dist: pandas
Requires-Dist: psutil
Requires-Dist: pyarrow
Requires-Dist: pydantic>=2.0.0
Requires-Dist: python-picard
Requires-Dist: pyvista
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Requires-Dist: qtpy
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Requires-Dist: threadpoolctl
Description-Content-Type: text/markdown

# <img src="https://raw.github.com/mne-tools/mne-bids-pipeline/main/docs/source/assets/mne.svg" alt="MNE Logo" height="20"> MNE-BIDS-Pipeline

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**MNE-BIDS-Pipeline is a full-flegded processing pipeline for your MEG and
EEG data.**

* It operates on data stored according to the [Brain Imaging Data
Structure (BIDS)](https://bids.neuroimaging.io/).
* Under the hood, it uses [MNE-Python](https://mne.tools).

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## 💡 Basic concepts and features

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* 🏆 Automated processing of MEG and EEG data from raw data to inverse solutions.
* 🛠️ Configuration via a simple text file.
* 📘 Extensive processing and analysis summary reports.
* 🧑‍🤝‍🧑 Process just a single participant, or as many as several hundreds of participants – in parallel.
* 💻 Execution via an easy-to-use command-line utility.
* 🆘 Helpful error messages in case something goes wrong.
* 👣 Data processing as a sequence of standard processing steps.
* ⏩ Steps are cached to avoid unnecessary recomputation.
* ⏏️ Data can be "ejected" from the pipeline at any stage. No lock-in!
* ☁️ Runs on your laptop, on a powerful server, or on a high-performance cluster via Dask.

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## 📘 Installation and usage instructions

Please find the documentation at
[**mne.tools/mne-bids-pipeline**](https://mne.tools/mne-bids-pipeline).

## ❤ Acknowledgments

The original pipeline for MEG/EEG data processing with MNE-Python was built
jointly by the [Cognition and Brain Dynamics Team](https://brainthemind.com/)
and the [MNE Python Team](https://mne.tools), based on scripts originally
developed for this publication:

> M. Jas, E. Larson, D. A. Engemann, J. Leppäkangas, S. Taulu, M. Hämäläinen,
> A. Gramfort (2018). A reproducible MEG/EEG group study with the MNE software:
> recommendations, quality assessments, and good practices. Frontiers in
> neuroscience, 12. <https://doi.org/10.3389/fnins.2018.00530>

The current iteration is based on BIDS and relies on the extensions to BIDS
for EEG and MEG. See the following two references:

> Pernet, C. R., Appelhoff, S., Gorgolewski, K. J., Flandin, G.,
> Phillips, C., Delorme, A., Oostenveld, R. (2019). EEG-BIDS, an extension
> to the brain imaging data structure for electroencephalography. Scientific
> Data, 6, 103. <https://doi.org/10.1038/s41597-019-0104-8>

> Niso, G., Gorgolewski, K. J., Bock, E., Brooks, T. L., Flandin, G., Gramfort, A.,
> Henson, R. N., Jas, M., Litvak, V., Moreau, J., Oostenveld, R., Schoffelen, J.,
> Tadel, F., Wexler, J., Baillet, S. (2018). MEG-BIDS, the brain imaging data
> structure extended to magnetoencephalography. Scientific Data, 5, 180110.
> <https://doi.org/10.1038/sdata.2018.110>

## Contributing

see <./CONTRIBUTING.md>
