H37Rv.fna	H37Rv.prot_table	Stewart Cole's reference M. tuberculosis sequence (NC_000962.2)
H37RvMA2.fna	H37RvMA2.prot_table	Sequenced strain from the Sassetti lab, with sequencing errors fixed (Ioerger et al. 2010; http://www.ncbi.nlm.nih.gov/pubmed/20472797).
H37RvBD.fna	H37RvBD.prot_table	Sequenced by the Broad Institute (NC_018143.2)
BCG.fna	BCG.prot_table	Reference genome for M. bovis BCG (NC_008769.1)
mc2_155_tamu.fna	mc2_155_tamu.prot_table	M. smegmatis mc2 155 sequenced at TAMU
	H37RvBD_mod3.prot_table	Annotation adjusted for an indel in the version of the H37Rv Broad sequence used in the Sassetti lab (for analyzing old datasets that have been previously processed using this sequence).