 M config/day_profiles/slurm/templates/rule_config.yaml
 M workflow/rules/bwa_mem2a_align_sort.smk
 M workflow/rules/doppel_mrkdups.smk
?? pipeline_details.md
?? pipeline_workflow_checkpoint_20260603T090524Z.mmd
?? pipeline_workflow_checkpoint_20260603T090524Z.pdf
?? pipeline_workflow_checkpoint_20260603T091319Z.mmd
?? pipeline_workflow_checkpoint_20260603T091319Z.pdf
?? pipeline_workflow_checkpoint_20260603T092220Z.mmd
?? pipeline_workflow_checkpoint_20260603T092220Z.pdf
?? pipeline_workflow_checkpoint_20260603T092252Z.mmd
?? pipeline_workflow_checkpoint_20260603T092252Z.pdf
?? pipeline_workflow_checkpoint_20260603T092322Z.mmd
?? pipeline_workflow_checkpoint_20260603T092322Z.pdf
?? pipeline_workflow_checkpoint_20260603T092549Z.mmd
?? pipeline_workflow_checkpoint_20260603T092549Z.pdf
?? pipeline_workflow_checkpoint_20260603T092636Z.mmd
?? pipeline_workflow_checkpoint_20260603T092636Z.pdf
?? pipeline_workflow_checkpoint_20260603T092737Z.mmd
?? pipeline_workflow_checkpoint_20260603T092737Z.pdf
?? pipeline_workflow_checkpoint_20260603T093757Z.mmd
?? pipeline_workflow_checkpoint_20260603T093757Z.pdf
?? pipeline_workflow_checkpoint_20260603T094334Z.mmd
?? pipeline_workflow_checkpoint_20260603T094334Z.pdf
?? pipeline_workflow_checkpoint_20260603T094638Z.mmd
?? pipeline_workflow_checkpoint_20260603T094638Z.pdf
?? pipeline_workflow_checkpoint_20260603T094756Z.mmd
?? pipeline_workflow_checkpoint_20260603T094756Z.pdf
?? pipeline_workflow_checkpoint_20260603T094845Z.mmd
?? pipeline_workflow_checkpoint_20260603T094845Z.pdf
?? pipeline_workflow_checkpoint_20260603T095059Z.mmd
?? pipeline_workflow_checkpoint_20260603T095059Z.pdf
?? pipeline_workflow_checkpoint_20260603T100600Z.mmd
?? pipeline_workflow_checkpoint_20260603T100600Z.pdf
?? pipeline_workflow_checkpoint_20260603T102101Z.mmd
?? pipeline_workflow_checkpoint_20260603T102101Z.pdf
?? pipeline_workflow_checkpoint_20260603T103602Z.mmd
?? pipeline_workflow_checkpoint_20260603T103602Z.pdf
?? pipeline_workflow_checkpoint_20260603T103902Z.mmd
?? pipeline_workflow_checkpoint_20260603T103902Z.pdf
?? pipeline_workflow_checkpoint_20260603T104005Z.mmd
?? pipeline_workflow_checkpoint_20260603T104005Z.pdf
?? pipeline_workflow_checkpoint_20260603T104011Z.mmd
?? pipeline_workflow_checkpoint_20260603T104011Z.pdf
?? pipeline_workflow_checkpoint_20260603T104304Z.mmd
?? pipeline_workflow_checkpoint_20260603T104304Z.pdf
?? pipeline_workflow_checkpoint_20260603T104310Z.mmd
?? pipeline_workflow_checkpoint_20260603T104310Z.pdf
?? pipeline_workflow_checkpoint_20260603T104731Z.mmd
?? pipeline_workflow_checkpoint_20260603T104731Z.pdf
?? pipeline_workflow_checkpoint_20260603T104735Z.mmd
?? pipeline_workflow_checkpoint_20260603T104735Z.pdf
?? pipeline_workflow_checkpoint_20260603T104918Z.mmd
?? pipeline_workflow_checkpoint_20260603T104918Z.pdf
?? pipeline_workflow_checkpoint_20260603T105420Z.mmd
?? pipeline_workflow_checkpoint_20260603T105420Z.pdf
?? pipeline_workflow_checkpoint_20260603T105423Z.mmd
?? pipeline_workflow_checkpoint_20260603T105423Z.pdf
?? pipeline_workflow_checkpoint_20260603T110924Z.mmd
?? pipeline_workflow_checkpoint_20260603T110924Z.pdf
?? pipeline_workflow_checkpoint_20260603T112425Z.mmd
?? pipeline_workflow_checkpoint_20260603T112425Z.pdf
?? pipeline_workflow_checkpoint_20260603T113926Z.mmd
?? pipeline_workflow_checkpoint_20260603T113926Z.pdf
?? pipeline_workflow_final_failed.mmd
?? pipeline_workflow_final_failed.pdf
?? pipeline_workflow_planned.mmd
?? pipeline_workflow_planned.pdf
?? sbatch_errs.log
?? slurm-1.out
?? slurm-2.out
?? slurm-3.out
