hitlist>=1.58.1
mhcgnomes>=3.20.0
oncoref>=1.8.150
pandas
numpy
tqdm

[all]
pyensembl
matplotlib

[dev]
pyensembl>=2.17.1
matplotlib
biopython
pytest
pytest-cov
ruff
pre-commit

[partition]
pyensembl

[peptides]
pyensembl

[plots]
matplotlib

[test-mhcflurry]
pytest
mhcflurry>=2.3.0

[vaccine]
hitlist>=1.65.1
oncoref>=1.8.207
pyensembl>=2.17.1
matplotlib
mhcflurry>=2.3.0
mhctools>=3.47.0
pepsickle>=0.1.3
dnachisel>=3.2.0
biopython
packaging
