SMS_BP
Single Molecule Simulations -BP
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fbm_BP.py File Reference

Classes

class  SMS_BP.fbm_BP.FBM_BP
 

Namespaces

namespace  SMS_BP
 
namespace  SMS_BP.fbm_BP
 

Functions

 SMS_BP.fbm_BP.MCMC_state_selection (int initial_state_index, np.ndarray transition_matrix, np.ndarray possible_states, int n)
 
 SMS_BP.fbm_BP._boundary_conditions (float fbm_store_last, float fbm_candidate, np.ndarray space_lim, str condition_type)
 

Variables

dict SMS_BP.fbm_BP.BOUNDARY_CONDITIONS
 
 SMS_BP.fbm_BP.transition_matrix = np.array([[0.4, 0.6], [0.2, 0.8]])
 
 SMS_BP.fbm_BP.possible_states = np.array([1, 2])
 
int SMS_BP.fbm_BP.n = 50000
 
int SMS_BP.fbm_BP.initial_state_index = 1
 
 SMS_BP.fbm_BP.state_select
 
 SMS_BP.fbm_BP.state_probability = np.zeros(len(possible_states))
 
 SMS_BP.fbm_BP.total_rate = np.sum(transition_matrix)
 
 SMS_BP.fbm_BP.true_state_probability = np.sum(transition_matrix, axis=0)/total_rate
 
 SMS_BP.fbm_BP.label
 
 SMS_BP.fbm_BP.alpha
 
int SMS_BP.fbm_BP.state_1_to_2 = np.zeros(n) - 1
 
int SMS_BP.fbm_BP.state_2_to_1 = np.zeros(n) - 1