SMS_BP
Single Molecule Simulations -BP
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Here is a list of all class members with links to the classes they belong to:
- _ -
__call__() :
SMS_BP.condensate_movement.Condensate
,
SMS_BP.decorators.CountCalls
,
SMS_BP.probability_functions.multiple_top_hat_probability
__init__() :
SMS_BP.condensate_movement.Condensate
,
SMS_BP.decorators.CountCalls
,
SMS_BP.fbm_BP.FBM_BP
,
SMS_BP.probability_functions.multiple_top_hat_probability
,
SMS_BP.simulate_cell.Simulate_cells
,
SMS_BP.simulate_foci.Track_generator
_autocovariance() :
SMS_BP.fbm_BP.FBM_BP
_calculate_non_subspace_probability() :
SMS_BP.probability_functions.multiple_top_hat_probability
_calculate_subspace_probability() :
SMS_BP.probability_functions.multiple_top_hat_probability
_check_init_dict() :
SMS_BP.simulate_cell.Simulate_cells
_condensate_positions :
SMS_BP.condensate_movement.Condensate
_condensates :
SMS_BP.simulate_cell.Simulate_cells
_convert_frame_to_time() :
SMS_BP.simulate_cell.Simulate_cells
,
SMS_BP.simulate_foci.Track_generator
_convert_time_to_frame() :
SMS_BP.simulate_foci.Track_generator
_convert_track_dict_msd() :
SMS_BP.simulate_cell.Simulate_cells
_convert_track_dict_points_per_frame() :
SMS_BP.simulate_cell.Simulate_cells
_cov :
SMS_BP.fbm_BP.FBM_BP
_create_map() :
SMS_BP.simulate_cell.Simulate_cells
_create_track_pop_dict() :
SMS_BP.simulate_cell.Simulate_cells
_define_space() :
SMS_BP.simulate_cell.Simulate_cells
_density_dif :
SMS_BP.probability_functions.multiple_top_hat_probability
_diff_a_n :
SMS_BP.fbm_BP.FBM_BP
_format_points_per_frame() :
SMS_BP.simulate_cell.Simulate_cells
_generate_condensate_positions() :
SMS_BP.condensate_movement.Condensate
_hurst_n :
SMS_BP.fbm_BP.FBM_BP
_non_subspace_probability :
SMS_BP.probability_functions.multiple_top_hat_probability
_num_subspace :
SMS_BP.probability_functions.multiple_top_hat_probability
_point_per_time_selection() :
SMS_BP.simulate_cell.Simulate_cells
_read_json() :
SMS_BP.simulate_cell.Simulate_cells
_scale :
SMS_BP.condensate_movement.Condensate
_setup() :
SMS_BP.fbm_BP.FBM_BP
_space_size :
SMS_BP.probability_functions.multiple_top_hat_probability
_subspace_centers :
SMS_BP.probability_functions.multiple_top_hat_probability
_subspace_probability :
SMS_BP.probability_functions.multiple_top_hat_probability
_subspace_radius :
SMS_BP.probability_functions.multiple_top_hat_probability
_times :
SMS_BP.condensate_movement.Condensate
_update_units() :
SMS_BP.simulate_cell.Simulate_cells
- a -
add_positions() :
SMS_BP.condensate_movement.Condensate
axial_detection_range_pix :
SMS_BP.simulate_cell.Simulate_cells
- c -
calculate_scale() :
SMS_BP.condensate_movement.Condensate
cell_axial_range :
SMS_BP.condensate_movement.Condensate
,
SMS_BP.simulate_foci.Track_generator
cell_space :
SMS_BP.condensate_movement.Condensate
,
SMS_BP.simulate_foci.Track_generator
condensate_diffusion_updated :
SMS_BP.simulate_cell.Simulate_cells
condensate_id :
SMS_BP.condensate_movement.Condensate
condensate_positions :
SMS_BP.condensate_movement.Condensate
condensates :
SMS_BP.simulate_cell.Simulate_cells
- d -
density_dif :
SMS_BP.probability_functions.multiple_top_hat_probability
diffusion_coefficient :
SMS_BP.condensate_movement.Condensate
diffusion_parameter :
SMS_BP.fbm_BP.FBM_BP
diffusion_parameter_transition_matrix :
SMS_BP.fbm_BP.FBM_BP
diffusion_transition_matrix :
SMS_BP.simulate_cell.Simulate_cells
dim :
SMS_BP.condensate_movement.Condensate
dt :
SMS_BP.fbm_BP.FBM_BP
- e -
exposure_time :
SMS_BP.simulate_cell.Simulate_cells
,
SMS_BP.simulate_foci.Track_generator
- f -
fbm() :
SMS_BP.fbm_BP.FBM_BP
frame_count :
SMS_BP.simulate_cell.Simulate_cells
,
SMS_BP.simulate_foci.Track_generator
func :
SMS_BP.decorators.CountCalls
- g -
generate_condensate_positions() :
SMS_BP.condensate_movement.Condensate
get_and_save_sim() :
SMS_BP.simulate_cell.Simulate_cells
get_cell() :
SMS_BP.simulate_cell.Simulate_cells
- h -
hurst_exponent :
SMS_BP.condensate_movement.Condensate
hurst_parameter :
SMS_BP.fbm_BP.FBM_BP
hurst_parameter_transition_matrix :
SMS_BP.fbm_BP.FBM_BP
hurst_transition_matrix :
SMS_BP.simulate_cell.Simulate_cells
- i -
init_dict :
SMS_BP.simulate_cell.Simulate_cells
initial_position :
SMS_BP.condensate_movement.Condensate
initial_scale :
SMS_BP.condensate_movement.Condensate
initial_time :
SMS_BP.condensate_movement.Condensate
interval_time :
SMS_BP.simulate_cell.Simulate_cells
,
SMS_BP.simulate_foci.Track_generator
- m -
max_x :
SMS_BP.simulate_foci.Track_generator
max_y :
SMS_BP.simulate_foci.Track_generator
min_x :
SMS_BP.simulate_foci.Track_generator
min_y :
SMS_BP.simulate_foci.Track_generator
- n -
n :
SMS_BP.fbm_BP.FBM_BP
non_subspace_probability :
SMS_BP.probability_functions.multiple_top_hat_probability
num_calls :
SMS_BP.decorators.CountCalls
num_subspace :
SMS_BP.probability_functions.multiple_top_hat_probability
- o -
oversample_motion_time :
SMS_BP.simulate_cell.Simulate_cells
,
SMS_BP.simulate_foci.Track_generator
- p -
pixel_size_pix :
SMS_BP.simulate_cell.Simulate_cells
plot_condensate() :
SMS_BP.condensate_movement.Condensate
psf_sigma_pix :
SMS_BP.simulate_cell.Simulate_cells
- s -
scale :
SMS_BP.condensate_movement.Condensate
space_lim :
SMS_BP.fbm_BP.FBM_BP
,
SMS_BP.simulate_foci.Track_generator
space_size :
SMS_BP.probability_functions.multiple_top_hat_probability
state_probability_diffusion :
SMS_BP.fbm_BP.FBM_BP
state_probability_hurst :
SMS_BP.fbm_BP.FBM_BP
subspace_centers :
SMS_BP.probability_functions.multiple_top_hat_probability
subspace_probability :
SMS_BP.probability_functions.multiple_top_hat_probability
subspace_radius :
SMS_BP.probability_functions.multiple_top_hat_probability
- t -
times :
SMS_BP.condensate_movement.Condensate
total_time :
SMS_BP.simulate_cell.Simulate_cells
,
SMS_BP.simulate_foci.Track_generator
track_diffusion_updated :
SMS_BP.simulate_cell.Simulate_cells
track_generation_constant() :
SMS_BP.simulate_foci.Track_generator
track_generation_no_transition() :
SMS_BP.simulate_foci.Track_generator
track_generation_with_transition() :
SMS_BP.simulate_foci.Track_generator
track_length_mean :
SMS_BP.simulate_cell.Simulate_cells
transition_matrix_time_step :
SMS_BP.simulate_cell.Simulate_cells
- u -
units_position :
SMS_BP.condensate_movement.Condensate
units_time :
SMS_BP.condensate_movement.Condensate
update_parameters() :
SMS_BP.probability_functions.multiple_top_hat_probability
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