VEP run statistics
| VEP version (API) | 112.0 (112) |
| Annotation sources | Custom: /storage/group/pcb5/default/kjk6173/variantfoldrna/tests/variantfoldrna_tmp/annotation.sorted.gff.gz (overlap) |
| Species | homo_sapiens |
| Command line options | --canonical --fasta /storage/home/kjk6173/group/kjk6173/variantfoldrna/tests/test_data/pipeline_input/yeast_ref_genome.fa --fields Location,REF_ALLELE,Allele,Consequence,Feature,cDNA_position,HGVSc,STRAND,CANONICAL --force_overwrite --gff /storage/group/pcb5/default/kjk6173/variantfoldrna/tests/variantfoldrna_tmp/annotation.sorted.gff.gz --hgvs --input_file /storage/group/pcb5/default/kjk6173/variantfoldrna/tests/variantfoldrna_tmp/vcf_chunks/vcf_no_header_1_normalized.vcf --output_file /storage/group/pcb5/default/kjk6173/variantfoldrna/tests/variantfoldrna_tmp/annotated_vcf_chunks_effects/vcf_no_header_1_annotated_one_per_line_temp.txt --show_ref_allele --tab |
| Start time | 2024-11-01 04:20:55 |
| End time | 2024-11-01 04:20:56 |
| Run time | 1 seconds |
| Input file | /storage/group/pcb5/default/kjk6173/variantfoldrna/tests/variantfoldrna_tmp/vcf_chunks/vcf_no_header_1_normalized.vcf |
| Output file | /storage/group/pcb5/default/kjk6173/variantfoldrna/tests/variantfoldrna_tmp/annotated_vcf_chunks_effects/vcf_no_header_1_annotated_one_per_line_temp.txt |
Data version
No data version information available.
General statistics
| Lines of input read | 1008 |
| Variants processed | 1008 |
| Variants filtered out | 0 |
| Novel / existing variants | - |
| Overlapped genes | 9 |
| Overlapped transcripts | 9 |
| Overlapped regulatory features | - |
Variant classes
Consequences (most severe)
Consequences (all)
Coding consequences
Variants by chromosome
Distribution of variants on chromosome I
Position in protein
