.bumpversion.cfg
LICENSE
MANIFEST.in
README.md
RELEASING.md
logo.jpg
pyproject.toml
pytest.ini
requirements-dev.txt
requirements.txt
setup.py
docs/requirements.txt
docs/source/conf.py
docs/source/index.rst
docs/source/advanced_topics/custom_sampling.rst
docs/source/advanced_topics/custom_solver.rst
docs/source/advanced_topics/index.rst
docs/source/advanced_topics/model_extensions.rst
docs/source/advanced_topics/varying_sims.rst
docs/source/api/emsa.model.rst
docs/source/api/emsa.rst
docs/source/api/emsa.sensitivity.rst
docs/source/api/emsa.sensitivity.target_calc.rst
docs/source/api/emsa.utils.rst
docs/source/usage/general_use.rst
docs/source/usage/index.rst
docs/source/usage/inputs.rst
docs/source/usage/model_eval.rst
docs/source/usage/model_struct.rst
docs/source/usage/quickstart.rst
docs/source/usage/sens_anal.rst
emsa/__init__.py
emsa.egg-info/PKG-INFO
emsa.egg-info/SOURCES.txt
emsa.egg-info/dependency_links.txt
emsa.egg-info/requires.txt
emsa.egg-info/top_level.txt
emsa/generics/__init__.py
emsa/generics/generic_model.py
emsa/generics/generic_sampler.py
emsa/generics/simulation_generic.py
emsa/model/__init__.py
emsa/model/epidemic_model.py
emsa/model/matrix_generator.py
emsa/model/model_base.py
emsa/model/r0_calculator.py
emsa/sensitivity/__init__.py
emsa/sensitivity/prcc.py
emsa/sensitivity/sampler_base.py
emsa/sensitivity/sensitivity_model_base.py
emsa/sensitivity/target_calc/__init__.py
emsa/sensitivity/target_calc/output_generator.py
emsa/sensitivity/target_calc/r0_calculator_lhs.py
emsa/sensitivity/target_calc/sol_based_target_calc.py
emsa/utils/__init__.py
emsa/utils/dataloader.py
emsa/utils/plotter.py
emsa/utils/results.py
emsa/utils/simulation_base.py
emsa_examples/__init__.py
emsa_examples/SEIHR_2_age_groups/__init__.py
emsa_examples/SEIHR_2_age_groups/seihr_2_ag_main.py
emsa_examples/SEIHR_2_age_groups/simulation_seihr.py
emsa_examples/SEIHR_2_age_groups/configs/model_struct.json
emsa_examples/SEIHR_2_age_groups/configs/sampling_config.json
emsa_examples/SEIR_no_age_groups/__init__.py
emsa_examples/SEIR_no_age_groups/seir_no_ag_main.py
emsa_examples/SEIR_no_age_groups/simulation_seir.py
emsa_examples/SEIR_no_age_groups/configs/model_struct.json
emsa_examples/SEIR_no_age_groups/configs/sampling_config.json
emsa_examples/SIR_no_age_groups/__init__.py
emsa_examples/SIR_no_age_groups/sir_no_ag_main.py
emsa_examples/SIR_no_age_groups/configs/model_struct.json
emsa_examples/SIR_no_age_groups/configs/sampling_config.json
emsa_examples/contact_sensitivity/__init__.py
emsa_examples/contact_sensitivity/contact_main.py
emsa_examples/contact_sensitivity/sampler_contact.py
emsa_examples/contact_sensitivity/sensitivity_model_contact.py
emsa_examples/contact_sensitivity/simulation_contact.py
emsa_examples/contact_sensitivity/configs/model_struct.json
emsa_examples/contact_sensitivity/configs/sampling_config.json
emsa_examples/data/age_distribution.xls
emsa_examples/data/contact_matrices.xls
emsa_examples/data/model_parameters.json
emsa_examples/utils/__init__.py
emsa_examples/utils/dataloader_16_ag.py
emsa_examples/vaccinated_sensitivity/__init__.py
emsa_examples/vaccinated_sensitivity/sampler_vaccinated.py
emsa_examples/vaccinated_sensitivity/sensitivity_model_vaccinated.py
emsa_examples/vaccinated_sensitivity/simulation_vacc.py
emsa_examples/vaccinated_sensitivity/vaccinated_main.py
emsa_examples/vaccinated_sensitivity/configs/model_struct.json
emsa_examples/vaccinated_sensitivity/configs/sampling_config.json
images/Flowchart.png
notebooks/EMSA_demo.ipynb
scripts/smoke_installed.py
tests/__init__.py
tests/test_example_sensitivity.py
tests/test_examples.py
tests/test_numerics_interface.py
tests/test_sensitivity.py
tests/test_solver.py
tests/mock_models/__init__.py
tests/mock_models/mock_SEIHR.py
tests/mock_models/mock_SEIR.py
tests/mock_models/mock_SIR.py
tests/mock_models/mock_contact.py
tests/mock_models/mock_emsa_vacc.py
tests/mock_models/mock_model_base.py
tests/mock_models/mock_vacc.py