LICENSE
MANIFEST.in
README.md
setup.py
bioscout/__init__.py
bioscout/__main__.py
bioscout/envcheck.py
bioscout/pipeline.py
bioscout/settings.py
bioscout.egg-info/PKG-INFO
bioscout.egg-info/SOURCES.txt
bioscout.egg-info/dependency_links.txt
bioscout.egg-info/entry_points.txt
bioscout.egg-info/requires.txt
bioscout.egg-info/top_level.txt
bioscout/change_moment_arms/__init__.py
bioscout/change_moment_arms/__main__.py
bioscout/change_moment_arms/cli.py
bioscout/change_moment_arms/core.py
bioscout/change_moment_arms/inspection.py
bioscout/change_moment_arms/paths.py
bioscout/change_moment_arms/solve.py
bioscout/change_moment_arms/volumes.py
bioscout/change_moment_arms/wraps.py
bioscout/config/__init__.py
bioscout/config/config_manager.py
bioscout/config/default_config.yaml
bioscout/config/trial_settings_template.xml
bioscout/core/__init__.py
bioscout/core/analysis_runner.py
bioscout/core/project_analysis.py
bioscout/gui/__init__.py
bioscout/gui/main_window.py
bioscout/gui/styles.py
bioscout/gui/widgets/__init__.py
bioscout/gui/widgets/batch_c3d_export.py
bioscout/gui/widgets/c3d_export.py
bioscout/gui/widgets/c3d_grf_viewer.py
bioscout/gui/widgets/ceinms_calibration_session.py
bioscout/gui/widgets/configuration.py
bioscout/gui/widgets/console_terminal.py
bioscout/gui/widgets/emg_analysis_tab.py
bioscout/gui/widgets/emg_normalization.py
bioscout/gui/widgets/emg_processing_tab.py
bioscout/gui/widgets/file_editor.py
bioscout/gui/widgets/grf_phase_detector.py
bioscout/gui/widgets/model_scaling.py
bioscout/gui/widgets/recording.py
bioscout/gui/widgets/results_viewer.py
bioscout/gui/widgets/training_tracking.py
bioscout/gui/widgets/trial_analysis.py
bioscout/gui/widgets/video_analysis.py
bioscout/load_tracking/__init__.py
bioscout/load_tracking/connect.py
bioscout/load_tracking/contraction.py
bioscout/load_tracking/fatigue.py
bioscout/load_tracking/importers.py
bioscout/load_tracking/metrics.py
bioscout/load_tracking/ml_interface.py
bioscout/load_tracking/muscle_map.py
bioscout/load_tracking/report.py
bioscout/load_tracking/sample_data.py
bioscout/load_tracking/shot_analysis.py
bioscout/load_tracking/strava_api.py
bioscout/load_tracking/tracker.py
bioscout/load_tracking/tracking_store.py
bioscout/load_tracking/zepp_cloud.py
bioscout/model_edit/__init__.py
bioscout/model_edit/__main__.py
bioscout/model_edit/cli.py
bioscout/model_edit/introspect.py
bioscout/model_edit/naming.py
bioscout/model_edit/prompt.py
bioscout/model_edit/recipe.py
bioscout/model_edit/run.py
bioscout/model_edit/spec.py
bioscout/model_edit/ops/__init__.py
bioscout/model_edit/ops/coordinates.py
bioscout/model_edit/ops/inspect.py
bioscout/model_edit/ops/markers.py
bioscout/model_edit/ops/moment_arms.py
bioscout/model_edit/ops/reserves.py
bioscout/model_edit/ops/scale.py
bioscout/model_edit/ops/strength.py
bioscout/models/Full_Body_with_ball.osim
bioscout/models/GPK_generic_modWO.osim
bioscout/models/Neck_model.osim
bioscout/models/README.txt
bioscout/models/Rajagopal2015.osim
bioscout/models/__init__.py
bioscout/models/arm26_ball.osim
bioscout/movement_detector/__init__.py
bioscout/movement_detector/classifier.py
bioscout/movement_detector/detector.py
bioscout/movement_detector/features.py
bioscout/movement_detector/gap_fill.py
bioscout/movement_detector/mocap.py
bioscout/movement_detector/session.py
bioscout/muscle_inspect/__init__.py
bioscout/muscle_inspect/__main__.py
bioscout/muscle_inspect/compare_settings.py
bioscout/muscle_inspect/core.py
bioscout/muscle_inspect/cross_body.py
bioscout/muscle_inspect/discontinuity.py
bioscout/muscle_inspect/geometry.py
bioscout/muscle_inspect/literature_jcf.py
bioscout/muscle_inspect/logutil.py
bioscout/muscle_inspect/moment_arm_motion.py
bioscout/muscle_inspect/moment_arms.py
bioscout/muscle_inspect/muscle_checker.py
bioscout/muscle_inspect/muscle_length_validation.py
bioscout/muscle_inspect/paths.py
bioscout/muscle_inspect/plotting.py
bioscout/muscle_inspect/radius_reduce.py
bioscout/muscle_inspect/run_moment_arm_inspection.py
bioscout/muscle_inspect/run_muscle_checker.py
bioscout/muscle_inspect/strength.py
bioscout/muscle_inspect/validate_against_literature.py
bioscout/muscle_inspect/validation.py
bioscout/muscle_inspect/wrap_fixer.py
bioscout/record/__init__.py
bioscout/record/screen_record.py
bioscout/record/video.py
bioscout/record/video_analyzer.py
bioscout/record/video_recorder.py
bioscout/setup_files/IK_task_set.xml
bioscout/setup_files/actuators_so.xml
bioscout/setup_files/calibrationCfg.xml
bioscout/setup_files/calibrationCfg_ceinms-nn_hybrid.xml
bioscout/setup_files/calibrationSetup_ceinms-nn_hybrid.xml
bioscout/setup_files/ceinms_cfg.xml
bioscout/setup_files/ceinms_cfg_optimise.xml
bioscout/setup_files/excitationGenerator.xml
bioscout/setup_files/externalloads.xml
bioscout/setup_files/inputData.xml
bioscout/setup_files/markers_FAIS.xml
bioscout/setup_files/markers_pyCGM.xml
bioscout/setup_files/setup_CEINMS.xml
bioscout/setup_files/setup_ID.xml
bioscout/setup_files/setup_IK.xml
bioscout/setup_files/setup_JRA.xml
bioscout/setup_files/setup_MA.xml
bioscout/setup_files/setup_SO.xml
bioscout/setup_files/setup_ceinms_exe.xml
bioscout/setup_files/setup_ceinms_optimise.xml
bioscout/setup_files/setup_scale.xml
bioscout/setup_files/subjectUncalibrated.xml
bioscout/tests/__init__.py
bioscout/tests/__main__.py
bioscout/tests/test_calibration_configs.py
bioscout/tests/test_calibration_optimiser.py
bioscout/tests/test_emg_analysis.py
bioscout/tests/test_emg_gain.py
bioscout/tests/test_emg_maps.py
bioscout/tests/test_file_edit.py
bioscout/tests/test_knee_pipeline.py
bioscout/tests/test_model_edit.py
bioscout/tests/test_motion_detect.py
bioscout/tests/test_uncalibrated_execution.py
bioscout/tests/test_uncalibrated_per_iteration.py
bioscout/tests/test_validation_paths.py
bioscout/tests/tps_personalise/__init__.py
bioscout/tests/tps_personalise/test_assembly.py
bioscout/tests/tps_personalise/test_config.py
bioscout/tests/tps_personalise/test_geometry.py
bioscout/tests/tps_personalise/test_landmarks_from_mri.py
bioscout/tests/tps_personalise/test_loaders.py
bioscout/tests/tps_personalise/test_osim_format.py
bioscout/tests/tps_personalise/test_tps.py
bioscout/tps_personalise/README.md
bioscout/tps_personalise/__init__.py
bioscout/tps_personalise/__main__.py
bioscout/tps_personalise/_tps_backend.py
bioscout/tps_personalise/axes.py
bioscout/tps_personalise/bioscout_adapter.py
bioscout/tps_personalise/cli.py
bioscout/tps_personalise/config.py
bioscout/tps_personalise/geometry.py
bioscout/tps_personalise/landmarks.py
bioscout/tps_personalise/landmarks_cli.py
bioscout/tps_personalise/landmarks_from_mri.py
bioscout/tps_personalise/logging_utils.py
bioscout/tps_personalise/model_compat.py
bioscout/tps_personalise/osim_format.py
bioscout/tps_personalise/osim_model.py
bioscout/tps_personalise/pipeline.py
bioscout/tps_personalise/recording.py
bioscout/tps_personalise/scaling.py
bioscout/tps_personalise/tps.py
bioscout/tps_personalise/data/config.example.yaml
bioscout/tps_personalise/data/markers_and_bone_markers_in_bodies.xml
bioscout/utils/__init__.py
bioscout/utils/analyse.py
bioscout/utils/analysis.py
bioscout/utils/app_window.png
bioscout/utils/collings.py
bioscout/utils/dependency_installer.py
bioscout/utils/emg.py
bioscout/utils/emg_analysis.py
bioscout/utils/emg_normalise.py
bioscout/utils/exportC3D.py
bioscout/utils/file_edit.py
bioscout/utils/helpers.py
bioscout/utils/io.py
bioscout/utils/logger.py
bioscout/utils/logo.png
bioscout/utils/md2pdf.py
bioscout/utils/model_report.py
bioscout/utils/model_scaler.py
bioscout/utils/motion_detect.py
bioscout/utils/openSim.py
bioscout/utils/platypus.jpg
bioscout/utils/platypus_sad.jpg
bioscout/utils/plotting.py
bioscout/utils/resource_cleanup.py
bioscout/utils/scale_measurements.py
bioscout/utils/session.py
bioscout/utils/session_layout.py
bioscout/utils/settings_updater.py
bioscout/utils/shared.py
bioscout/utils/shot_analysis_card.png
bioscout/utils/stats.py
bioscout/utils/subject_profile.py
bioscout/utils/subject_registry.py
bioscout/utils/summary.py
bioscout/utils/xml_utils.py
bioscout/utils/ceinms/__init__.py
bioscout/utils/ceinms/commands.py
bioscout/utils/ceinms/configs.py
bioscout/utils/ceinms/modes.py
bioscout/utils/ceinms/plot.py
bioscout/utils/ceinms/shared.py
bioscout/utils/ceinms/bin/CEINMS.exe
bioscout/utils/ceinms/bin/CEINMSoptimise.exe
bioscout/utils/ceinms/bin/CHANGELOG.txt
bioscout/utils/ceinms/bin/asmjit.dll
bioscout/utils/ceinms/bin/c10.dll
bioscout/utils/ceinms/bin/ceinms-nn-calibrate.exe
bioscout/utils/ceinms/bin/concrt140.dll
bioscout/utils/ceinms/bin/fbgemm.dll
bioscout/utils/ceinms/bin/fbjni.dll
bioscout/utils/ceinms/bin/libiomp5md.dll
bioscout/utils/ceinms/bin/libiompstubs5md.dll
bioscout/utils/ceinms/bin/msvcp140.dll
bioscout/utils/ceinms/bin/msvcp140_1.dll
bioscout/utils/ceinms/bin/msvcp140_2.dll
bioscout/utils/ceinms/bin/msvcp140_atomic_wait.dll
bioscout/utils/ceinms/bin/msvcp140_codecvt_ids.dll
bioscout/utils/ceinms/bin/pytorch_jni.dll
bioscout/utils/ceinms/bin/torch.dll
bioscout/utils/ceinms/bin/torch_cpu.zip
bioscout/utils/ceinms/bin/torch_global_deps.dll
bioscout/utils/ceinms/bin/uv.dll
bioscout/utils/ceinms/bin/vcruntime140.dll
bioscout/utils/ceinms/bin/vcruntime140_1.dll
bioscout/utils/ceinms/bin/xerces-c_3_1_vc100.dll