LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
docs/Makefile
docs/make.bat
docs/requirements.txt
docs/source/cli.rst
docs/source/conf.py
docs/source/databases.rst
docs/source/example-results.csv
docs/source/index.rst
docs/source/install.rst
docs/source/tutorial.rst
docs/source/_static/css/custom.css
docs/source/api/api.rst
docs/source/api/cli.rst
docs/source/api/database.rst
docs/source/api/kmers.rst
docs/source/api/metric.rst
docs/source/api/misc.rst
docs/source/api/query.rst
docs/source/api/results.rst
docs/source/tutorial-files/.gitignore
docs/source/tutorial-files/Makefile
docs/source/tutorial-files/example-genomes.zip
docs/source/tutorial-files/results-transposed.csv
docs/source/tutorial-files/results.csv
docs/source/tutorial-files/scripts/transpose-results.py
src/gambit/__init__.py
src/gambit/__main__.py
src/gambit/classify.py
src/gambit/cluster.py
src/gambit/kmers.py
src/gambit/metric.py
src/gambit/query.py
src/gambit/results.py
src/gambit/seq.py
src/gambit.egg-info/PKG-INFO
src/gambit.egg-info/SOURCES.txt
src/gambit.egg-info/dependency_links.txt
src/gambit.egg-info/entry_points.txt
src/gambit.egg-info/not-zip-safe
src/gambit.egg-info/requires.txt
src/gambit.egg-info/top_level.txt
src/gambit/_cython/__init__.py
src/gambit/_cython/kmers.c
src/gambit/_cython/kmers.pxd
src/gambit/_cython/kmers.pyx
src/gambit/_cython/metric.c
src/gambit/_cython/metric.pxd
src/gambit/_cython/metric.pyx
src/gambit/_cython/threads.c
src/gambit/_cython/threads.pyx
src/gambit/_cython/types.pxd
src/gambit/cli/__init__.py
src/gambit/cli/common.py
src/gambit/cli/debug.py
src/gambit/cli/dist.py
src/gambit/cli/query.py
src/gambit/cli/root.py
src/gambit/cli/signatures.py
src/gambit/cli/tree.py
src/gambit/db/__init__.py
src/gambit/db/models.py
src/gambit/db/refdb.py
src/gambit/db/sqla.py
src/gambit/sigs/__init__.py
src/gambit/sigs/base.py
src/gambit/sigs/calc.py
src/gambit/sigs/hdf5.py
src/gambit/util/__init__.py
src/gambit/util/indexing.py
src/gambit/util/io.py
src/gambit/util/json.py
src/gambit/util/misc.py
src/gambit/util/progress.py
tests/test_classify.py
tests/test_cluster.py
tests/test_kmers.py
tests/test_metric.py
tests/test_misc.py
tests/test_query.py
tests/test_results.py
tests/test_seq.py
tests/test_tests_common.py
tests/testdb.py