# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class

# Cython stuff
cython_debug

# C extensions
*.so
*.cpp
#*.ipynb
ssa.ipynb
cython_example.ipynb
*.c
*.html

# MacOS junk
.DS_Store

# VScode junk
.vscode/

# Distribution / packaging
.Python
env/
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
.idea/
*.egg-info/
.installed.cfg
*.egg

# PyInstaller
#  Usually these files are written by a python script from a template
#  before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*,cover
.hypothesis/

# Translations
*.mo
*.pot

# Django stuff:
*.log
local_settings.py

# Flask stuff:
instance/
.webassets-cache

# Scrapy stuff:
.scrapy

# Sphinx documentation
docs/_build/

# PyBuilder
target/

# IPython Notebook
.ipynb_checkpoints

# pyenv
.python-version

# celery beat schedule file
celerybeat-schedule

# dotenv
.env

# virtualenv
venv/
ENV/

# Spyder project settings
.spyderproject

# Rope project settings
.ropeproject
interactive_testing.ipynb
.pck
*.svg
# *.py
examples/models/generic_expressions.xml
examples/models/integrase_control.xml
examples/models/integrase_model_artavanis.xml
examples/models/mutation.xml
examples/models/oscillator.xml
examples/models/pierce_cas9.xml
examples/models/pierce_cas9_general.xml
examples/models/plasmid_control.xml
examples/models/plasmid_replication_gene_expression.xml
examples/models/plasmid_replication_transcription.xml
examples/models/simple_txtl.xml
examples/models/sontag.xml
examples/models/transcription_model_without_delay.xml
examples/models/transcription_with_delay.xml
examples/models/txtl_toolbox_model.xml
examples/models/GFP.xml
examples/models/txtl_model.xml
examples/models/random_model.xml
examples/models/random_model_sbml.xml
examples/models/sbml_test_bioscrape.xml
examples/models/sbml_test_bioscrape.xml
examples/models/represillator_bioscrape.xml
examples/models/represillator_sbml_back.xml
examples/models/txtl_model_sbml.xml
inference examples/lmfit_results.csv
inference examples/mcmc_results.csv
inference examples/mcmc_results.txt
inference examples/individual examples/lmfit_results.csv
inference examples/individual examples/mcmc_results.csv
inference examples/individual examples/mcmc_results.txt
MANIFEST
mcmc_results.csv
mcmc_results.txt
lmfit_results.csv
mcmc_results.txt
unzip_dist.py
pip-wheel-metadata/*