.gitignore
.pre-commit-config.yaml
LICENSE
README.md
pyproject.toml
.github/workflows/release.yml
.github/workflows/tests.yml
demos/alignment.ipynb
demos/neuron_registration.ipynb
demos/statistics.ipynb
src/catan/__init__.py
src/catan/__main__.py
src/catan/_version.py
src/catan/cli/__init__.py
src/catan/cli/__main__.py
src/catan/cli/main.py
src/catan/cli/match.py
src/catan/cli/pipeline.py
src/catan/core/__init__.py
src/catan/core/alignment.py
src/catan/core/analysis.py
src/catan/core/data.py
src/catan/core/image_correlation.py
src/catan/core/io.py
src/catan/core/plot_utils.py
src/catan/core/utils.py
src/catan/core/structures/__init__.py
src/catan/core/structures/remap.py
src/catan/core/structures/session.py
src/catan/gui/__init__.py
src/catan/gui/app.py
src/catan/gui/GUI_elements/__init__.py
src/catan/gui/GUI_elements/dialog_load_field.py
src/catan/gui/GUI_elements/display_area.py
src/catan/gui/GUI_elements/display_section.py
src/catan/gui/GUI_elements/main_app.py
src/catan/gui/GUI_elements/main_menu.py
src/catan/gui/GUI_elements/main_window.py
src/catan/gui/GUI_elements/resource_monitor.py
src/catan/gui/GUI_elements/session_overview.py
src/catan/gui/GUI_elements/fragments/IconButton.py
src/catan/gui/GUI_elements/fragments/RotatedToolButton.py
src/catan/gui/GUI_elements/utils/menu_creation.py
src/catan/gui/background_tasks/TaskManager.py
src/catan/gui/background_tasks/Worker.py
src/catan/gui/background_tasks/__init__.py
src/catan/gui/data/__init__.py
src/catan/gui/data/analysis.py
src/catan/gui/data/loading.py
src/catan/gui/data/utils.py
src/catan/gui/data/statistics/__init__.py
src/catan/gui/data/statistics/dimensions.py
src/catan/gui/data/statistics/plotdata_histogram.py
src/catan/gui/data/statistics/plotdata_scatter.py
src/catan/gui/data/statistics/plotdata_series.py
src/catan/gui/data/statistics/prepared_data.py
src/catan/gui/data/statistics/queries.py
src/catan/gui/data/statistics/statistics.py
src/catan/gui/interaction/__init__.py
src/catan/gui/interaction/busy_screen.py
src/catan/gui/interaction/click_events.py
src/catan/gui/plots/BasePlot.py
src/catan/gui/plots/Footprints.py
src/catan/gui/plots/Overview.py
src/catan/gui/plots/Raster.py
src/catan/gui/plots/SelectionDisplay.py
src/catan/gui/plots/Statistics.py
src/catan/gui/plots/StatisticsData.py
src/catan/gui/plots/Traces.py
src/catan/gui/plots/__init__.py
src/catan/gui/plots/colors.py
src/catan/gui/plots/styles.py
src/catan/gui/plots/helper/FootprintSlider.py
src/catan/gui/plots/helper/HistogramMesh.py
src/catan/gui/plots/helper/Threshold.py
src/catan/gui/plots/helper/cameras.py
src/catan/gui/plots/helper/series_with_confidence.py
src/catan/gui/resources/__init__.py
src/catan/gui/resources/loader.py
src/catan/gui/resources/qt.py
src/catan/gui/resources/styles/main.qss
src/catan/gui/structures/__init__.py
src/catan/gui/structures/data.py
src/catan/gui/structures/state.py
src/catan/gui/utils/__init__.py
src/catan/gui/utils/utils_analysis.py
src/catan/tracking/__init__.py
src/catan/tracking/neuron_tracking.py
src/catan/tracking/neuron_tracking_analysis.py
src/catan/tracking/analytics/correlation_model.py
src/catan/tracking/analytics/distance_model.py
src/catan/tracking/analytics/fit_model_theoretical.py
src/catan/tracking/analytics/pairwise_distance.py
src/catan/tracking/analytics/pairwise_distance_blurred.py
src/catan/tracking/plots/display_footprints.py
src/catan/tracking/utils_new/__init__.py
src/catan/tracking/utils_new/footprint_correlation.py
src/catan/tracking/utils_new/plots.py
src/catan_toolbox.egg-info/PKG-INFO
src/catan_toolbox.egg-info/SOURCES.txt
src/catan_toolbox.egg-info/dependency_links.txt
src/catan_toolbox.egg-info/entry_points.txt
src/catan_toolbox.egg-info/requires.txt
src/catan_toolbox.egg-info/scm_file_list.json
src/catan_toolbox.egg-info/scm_version.json
src/catan_toolbox.egg-info/top_level.txt
tests/test_core_smoke.py
tests/test_entrypoints.py
tests/test_gui_smoke.py
tests/test_imports.py
tests/test_resources.py
tests/test_version.py
tests/cli/test_cli.py