Metadata-Version: 2.1
Name: jaffatools
Version: 0.3.0
Summary: Tools for working with JAFFA fusion gene detection
Home-page: https://github.com/WhaleGe/jaffatools
Author: Waidong Huang
Author-email: wdhuang927@gmail.com
License: UNKNOWN
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >=3.6
Description-Content-Type: text/markdown
License-File: LICENSE


# JaffaTools

A Python toolkit for JAFFA fusion gene detection

### Instructions

1. **Filter FASTQ files**: Filter FASTQ files based on the reads in the BAM file and keep only matching reads.
2. **Run JAFFA**: Encapsulates the running function of the JAFFA fusion gene detection process.
3. **Add NB:Z tags**: Extract NB:Z tags from the BAM file and add them to the JAFFA result CSV file.

## Install

```bash
pip install jaffatools

