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CLAUDE.md
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MANIFEST.in
README.md
pyproject.toml
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cerr/datasets/radiomics_settings/ibsi_settings/ibsi2_phase_1/ibsi_phase2_1_id_3c3.json
cerr/datasets/radiomics_settings/ibsi_settings/ibsi2_phase_1/ibsi_phase2_1_id_4a1.json
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cerr/datasets/radiomics_settings/ibsi_settings/ibsi2_phase_2/ibsi_phase2_2_id_1b.json
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cerr/datasets/radiomics_settings/ibsi_settings/ibsi2_phase_2/ibsi_phase2_2_id_2b.json
cerr/datasets/radiomics_settings/ibsi_settings/ibsi2_phase_2/ibsi_phase2_2_id_3a.json
cerr/datasets/radiomics_settings/ibsi_settings/ibsi2_phase_2/ibsi_phase2_2_id_3b.json
cerr/datasets/radiomics_settings/ibsi_settings/ibsi2_phase_2/ibsi_phase2_2_id_4a.json
cerr/datasets/radiomics_settings/ibsi_settings/ibsi2_phase_2/ibsi_phase2_2_id_4b.json
cerr/datasets/radiomics_settings/ibsi_settings/ibsi2_phase_2/ibsi_phase2_2_id_5a.json
cerr/datasets/radiomics_settings/ibsi_settings/ibsi2_phase_2/ibsi_phase2_2_id_5b.json
cerr/datasets/radiomics_settings/ibsi_settings/ibsi2_phase_2/ibsi_phase2_2_id_6a.json
cerr/datasets/radiomics_settings/ibsi_settings/ibsi2_phase_2/ibsi_phase2_2_id_6b.json
cerr/datasets/sample_ct/dosimetric_model_test_data/dose.nii
cerr/datasets/sample_ct/dosimetric_model_test_data/mask_(testStr1 U testStr3).nii
cerr/datasets/sample_ct/dosimetric_model_test_data/mask_testStr1.nii
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cerr/dcm_export/__init__.py
cerr/dcm_export/iod_helper.py
cerr/dcm_export/reg_iod.py
cerr/dcm_export/rtstruct_iod.py
cerr/imrtp/README_IMRTP.md
cerr/imrtp/__init__.py
cerr/imrtp/imrtp.py
cerr/imrtp/imrtp_gui.py
cerr/imrtp/imrtp_problem.py
cerr/imrtp/dosecalc/__init__.py
cerr/imrtp/dosecalc/influence.py
cerr/imrtp/dosecalc/montecarlo.py
cerr/imrtp/dosecalc/qib.py
cerr/imrtp/dosecalc/qib_data.py
cerr/imrtp/dosecalc/raytrace.py
cerr/imrtp/dosecalc/recalc.py
cerr/imrtp/dosecalc/rtplan.py
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cerr/imrtp/dosecalc/QIBData/aahn_6b.dat
cerr/imrtp/dosecalc/QIBData/qib_tables.npz
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cerr/radiomics/vector_elasticity.py
cerr/registration/__init__.py
cerr/registration/register.py
cerr/registration/settings/plastimatch_ct_ct_intra_pt_affine.txt
cerr/registration/settings/plastimatch_ct_ct_intra_pt_bsplines.txt
cerr/registration/settings/plastimatch_ct_ct_intra_pt_w_masks_affine.txt
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cerr/roe/dosimetric_models.py
cerr/roe/roe_gui.py
cerr/roe/model_parameters/Bronchial stenosis (cox).json
cerr/roe/model_parameters/Bronchial stenosis (logistic).json
cerr/roe/model_parameters/Bronchial toxicity  (Grade 3+).json
cerr/roe/model_parameters/Bronchial toxicity (Grade 5).json
cerr/roe/model_parameters/Esophagitis (Huang).json
cerr/roe/model_parameters/Esophagitis (Jackson_cox).json
cerr/roe/model_parameters/Esophagitis (Jackson_logistic).json
cerr/roe/model_parameters/Esophagitis (Wijsman).json
cerr/roe/model_parameters/Pneumonitis (Appelt).json
cerr/roe/model_parameters/Rectal bleeding (grade 2+).json
cerr/scripts/demo_imrtp_gui.py
cerr/utils/__init__.py
cerr/utils/ai_pipeline.py
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cerr/utils/image_proc.py
cerr/utils/interp.py
cerr/utils/mask.py
cerr/utils/statistics.py
cerr/utils/uid.py
cerr/viewer/API_pycerr_gui.md
cerr/viewer/README_pycerr_gui.md
cerr/viewer/__init__.py
cerr/viewer/cerr_colormaps.py
cerr/viewer/pycerr_gui.py
cerr/viewer/pycerr_napari.py
cerr/viewer/pycerr_nbviewer.py
docs/Makefile
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docs/cerr.dataclasses.rst
docs/cerr.datasets.rst
docs/cerr.dcm_export.rst
docs/cerr.imrtp.dosecalc.rst
docs/cerr.imrtp.rst
docs/cerr.mri_metrics.rst
docs/cerr.radiomics.rst
docs/cerr.registration.rst
docs/cerr.roe.rst
docs/cerr.rst
docs/cerr.utils.rst
docs/cerr.viewer.rst
docs/conf.py
docs/index.rst
docs/make.bat
docs/modules.rst
docs/requirements.txt
docs/setup.rst
docs/tests.rst
pycerr.egg-info/PKG-INFO
pycerr.egg-info/SOURCES.txt
pycerr.egg-info/dependency_links.txt
pycerr.egg-info/not-zip-safe
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tests/test_roe_models.py